Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., Flagellin from Azospirillum sp. SherDot2

 Score =  107 bits (268), Expect = 3e-28
 Identities = 67/193 (34%), Positives = 108/193 (55%), Gaps = 8/193 (4%)

Query: 5   VNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRGLGIA 64
           ++TN ++  A R+LN  S   + S+ +++SG+RI  A DDAAGL +   L++ +  L  A
Sbjct: 4   ISTNTASNSALRYLNINSTNQSDSVSKIASGSRITKASDDAAGLAVGTSLKSDVTVLNQA 63

Query: 65  VRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALNDELN 124
             NA+ G SI+QTA+G M   + ++QRMR L+ QS +GS +  ER  L  E   L DE++
Sbjct: 64  ATNASHGSSILQTADGGMSSISDIVQRMRSLATQSLSGSVTDNERSYLDAEFQQLQDEID 123

Query: 125 RIAETTSFAGRKLLNGQ---FMKASFQIGASSGEAVQLSLRNMRS-----DSLEMGGFSY 176
            IA  T F    LL+G        SF++G +S + + + +  + +     ++L++G  + 
Sbjct: 124 GIASGTRFNDESLLDGATNWSTGVSFRVGTTSNDNITVQIAGVTTTGLGINTLDVGTSAT 183

Query: 177 VAAALADKQWQVT 189
            AAAL      VT
Sbjct: 184 AAAALTALDTAVT 196



 Score = 75.5 bits (184), Expect = 2e-18
 Identities = 67/297 (22%), Positives = 137/297 (46%), Gaps = 47/297 (15%)

Query: 92  MRDLSLQSANGSNSAAERVALQEEMAALNDELNRIAETTSF---------AGRKLLNGQF 142
           +R L++ S N S+S + ++A    +   +D+   +A  TS          A     +G  
Sbjct: 14  LRYLNINSTNQSDSVS-KIASGSRITKASDDAAGLAVGTSLKSDVTVLNQAATNASHGSS 72

Query: 143 MKASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAAALADKQWQVTKGKQQLNISYVNA 202
           +  +   G SS   +   +R++ + SL        + ++ D +      +  L+  +   
Sbjct: 73  ILQTADGGMSSISDIVQRMRSLATQSL--------SGSVTDNE------RSYLDAEFQQL 118

Query: 203 QGENENIQIQAKEGDD--IEELATYINGKTDKVSASVNEKGQLQLYIAGKETSGTLSFSG 260
           Q E + I    +  D+  ++    +  G + +V  + N+   +Q  IAG  T+G      
Sbjct: 119 QDEIDGIASGTRFNDESLLDGATNWSTGVSFRVGTTSNDNITVQ--IAGVTTTGL----- 171

Query: 261 SLANELQMNLLGYEAVDNLDISSAGGAQRAVSVIDTALKYVDGHRSELGAMQNRFQHAIS 320
                          ++ LD+ ++  A  A++ +DTA+  +   R+++GA+ +RF+    
Sbjct: 172 --------------GINTLDVGTSATAAAALTALDTAVTTLSDARADVGALISRFEFRSD 217

Query: 321 NLDNVHENLAASNSRIKDADYAKETTQMIKQQILQQVSTSVLAQAKRQPKFVLFLLR 377
            +D   EN  A+ S+I D D A+E +++  +++L Q + +VL+QA + P+ +L LLR
Sbjct: 218 MIDTTIENTEAAQSKIMDVDVAEEQSKLASEKVLTQAAIAVLSQANQMPENLLSLLR 274