Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., branched-chain alpha-keto acid dehydrogenase subunit E2 from Pseudomonas simiae WCS417

 Score =  231 bits (588), Expect = 4e-65
 Identities = 175/472 (37%), Positives = 236/472 (50%), Gaps = 96/472 (20%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTN+A++T Q  L  A N+ QTSM+RLS+G  INSAKD+A+GLQISNRL  Q  G
Sbjct: 1   MALTVNTNIASITTQNGLGKAANSLQTSMQRLSTGLSINSAKDNASGLQISNRLTSQING 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L  AV+NANDGISIAQTAEGAM  +T+ILQ+MR L+L SA GS S ++R + QEE  AL 
Sbjct: 61  LGQAVKNANDGISIAQTAEGAMQASTDILQKMRTLALSSATGSLSDADRTSNQEEYQALT 120

Query: 121 DELNRIAETT----------SFGGNKLLNGTFSTKSFQIGAD------------------ 152
            EL RI++TT          S+G   +  G  + ++  +  D                  
Sbjct: 121 SELTRISQTTTFGGQKLLDGSYGTKAIQVGANANETINLSLDNVAANNIGSQQIKSVGVA 180

Query: 153 ---------------NGEAVMLTL------KDMRSD-NRMMGGTSY-----------VAA 179
                          NG+   +T+      K + S  N  +GG S             AA
Sbjct: 181 PSASGVAGGVIGITGNGQTNSVTVAAGSSAKTIASQLNGAVGGLSASASTEAQFVVGAAA 240

Query: 180 EGKDKDWKVQAGANDITFT-----------LK----------DIDGNDQTITVNAKEGDD 218
           +     + +  G    TFT           LK          + D   Q+++V +  G++
Sbjct: 241 KTAPATFSMTVGGQTTTFTGVTDTASLADQLKSNAAKLGISVNFDEAKQSLSVKSDSGEN 300

Query: 219 IE-EVATYINGQTDMVKASVNEKGQLQIFAGNNKVTGDV--------AFSG----GLAGA 265
           +E   AT     T   K      G     A   K TG V        A +G    GL  A
Sbjct: 301 LEFSAATAAGSITVATKDGSGSYGSAVAIANGLKATGAVNLDSSKGYALNGAGVTGLFAA 360

Query: 266 LNMQAGTAET-VDTIDVTSVGGAQQSVAVIDSALKYVDSHRAELGAFQNRFNHAISNLDN 324
               A +A+T V   DVTS   AQ ++AVID A+  +DS R+ LGA QNR    + NL N
Sbjct: 361 TGTAAASAKTSVAQTDVTSAFNAQSAIAVIDKAIGGIDSVRSGLGAVQNRLTTTVDNLTN 420

Query: 325 INENVNASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPNAALSLL 376
           I +N  A++S ++DTDFA ET  LTK Q L  A++++L+QA Q P+A L LL
Sbjct: 421 IQKNSTAARSTVQDTDFAAETAELTKQQTLQSAATAILSQANQLPSAVLKLL 472