Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., Flagellin FliC from Variovorax sp. SCN45

 Score =  153 bits (387), Expect = 1e-41
 Identities = 98/260 (37%), Positives = 144/260 (55%), Gaps = 7/260 (2%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA  +NTN  ++  Q  L  +  A  +++ RLSSG +INSAKDDAAG  I+NR     +G
Sbjct: 1   MAQVINTNSLSLLTQNNLNKSQAALNSAIGRLSSGMRINSAKDDAAGQAIANRFTANIKG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L  A RNANDGISIAQT EGA+ E  N LQR+R+LS+Q+  G+NS ++  +IQ EIT   
Sbjct: 61  LTQATRNANDGISIAQTTEGALTEVNNNLQRIRELSVQAGTGTNSATDLDSIQGEITQRL 120

Query: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAE 180
           DE+NR++  T F G K+L+      + Q+GA++GE + + L+++ +    + G +     
Sbjct: 121 DEINRVSNQTQFNGVKVLSANAGKLTVQVGANDGETIDIDLQEISAKTLGLDGFN---VN 177

Query: 181 GKDKDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDDIEEVATYINGQTDMVKASVNEK 240
           GK      +A  ND+T       G   T+T +  +    + V    +G T +V A+    
Sbjct: 178 GKGVSANTKANVNDLTKAGATGTG-PYTVTTSFAKVTAEQAVDAMQDGNTAVVGATTY-- 234

Query: 241 GQLQIFAGNNKVTGDVAFSG 260
            +    AGN   T  VA  G
Sbjct: 235 -KYDATAGNFTTTATVATGG 253



 Score = 90.1 bits (222), Expect = 1e-22
 Identities = 77/236 (32%), Positives = 111/236 (47%), Gaps = 18/236 (7%)

Query: 150 GADNGEAVMLTLKDMRSDNRMMG---GTSYVAAEGKDKDWKVQAGANDITFTLKDIDGND 206
           GAD G        +  + N   G   G +Y     KD      AGA       + I  + 
Sbjct: 324 GADTGTGASSIKLNGTTYNFAAGANSGFTYTKTVSKDDVKTAVAGAASTVNLGQGIFAST 383

Query: 207 QTITVNAKEGDDIEEVATYINGQTDMVKASVNEKGQLQIFAGNNKVTGDVAFSGGLAGAL 266
            T      +  D     TY++   +M K + +      + A N +VT  VA + G  G  
Sbjct: 384 VTFAAAGGQSSD-----TYMDNDKEMTKTA-SYTTDYAVNAVNGEVT--VASTTG-TGKY 434

Query: 267 NMQAGTAETVD-----TIDVTSVGG-AQQSVAVIDSALKYVDSHRAELGAFQNRFNHAIS 320
             Q G    ++     T D TS G      +A +D+AL  VD+ R  LGA QNRF+  I+
Sbjct: 435 AAQVGATAYINSAGKLTTDTTSKGTKTTDPLAALDAALAKVDTLRGSLGAVQNRFDSVIA 494

Query: 321 NLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPNAALSLL 376
           NL     N+++S+SRI+D D+A E + +T++QIL QA +SVL+QA Q     LSLL
Sbjct: 495 NLGTTVTNLSSSRSRIEDADYAVEVSNMTRAQILQQAGTSVLSQANQTTQGVLSLL 550