Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 687 a.a., flagellin, filament structural protein from Pseudomonas putida KT2440

 Score =  207 bits (527), Expect = 7e-58
 Identities = 133/322 (41%), Positives = 182/322 (56%), Gaps = 46/322 (14%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTN+ +M+ Q+ L  +++A  T+M RLSSG KINSAKDDAAGLQISNRL  Q +G
Sbjct: 1   MALTVNTNITSMSVQKNLNKSSDALGTTMGRLSSGLKINSAKDDAAGLQISNRLTTQIKG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L VAV+NANDGISIAQTAEGAM  + NI+QRMR+L+LQSANGSNS  +R ++Q+E TAL+
Sbjct: 61  LSVAVKNANDGISIAQTAEGAMATSGNIMQRMRELALQSANGSNSDDDRASMQQEFTALS 120

Query: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMR--------SDNRMMG 172
            EL RIA TT+FGG  LL+GTFS  SFQ+GA++ E++   +KD+         ++  + G
Sbjct: 121 GELTRIANTTTFGGRNLLDGTFSGSSFQVGANSNESISFGMKDVSATSMKGNYNEASVAG 180

Query: 173 GTSYVAAEGKDKDWKVQAGANDITFTLKDIDG-----------------------NDQTI 209
           G + + A       K   G N+   T   + G                          T 
Sbjct: 181 GVATLQASVTGAAGKF--GTNNAGSTSASVVGTAGAGVFDKPTIGAAAGNLVLNVGTTTT 238

Query: 210 TVNAKEGDDIEEVATYINGQTDMVKASVNEKGQLQIFAGNNKVTGDVAFSGGLAGALNMQ 269
           T+ A  GD +++V   IN +T              + A  +  TG +   G    A  + 
Sbjct: 239 TIAAAAGDTLQDVVDNINLET----------SNTGVTASIDSATGALKLDG--TQAFTID 286

Query: 270 AGTAETVDT-IDVTSVGGAQQS 290
           A T + + T + +   GGAQ S
Sbjct: 287 ASTDDVLSTALGLAEAGGAQLS 308



 Score =  132 bits (333), Expect = 2e-35
 Identities = 109/371 (29%), Positives = 174/371 (46%), Gaps = 27/371 (7%)

Query: 20  GATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAE 79
           G+TN    + + LSS     +A+    G+  S         L+ A      G +   T  
Sbjct: 331 GSTNIALVATDTLSSVVGKVNAQTGTTGVTASIDSATGQLKLNSAAGFDVGGTAGTLTGL 390

Query: 80  GAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALNDELNRIAETTSFGGNKLLN 139
           G    +  I  +   L+  ++   N  +   A  +++ A+ D +N         G  L  
Sbjct: 391 GLTAGSVAIAPQTTGLASAASIDINGTTFNFAQGDDLDAIVDNINNNGAGAVGSGTALTG 450

Query: 140 GTFSTKSFQIGADNGEAVMLTL--KDMRSDNRM-MGGTSYVAAEGKDKDWKVQAGANDIT 196
            T          DNG  V+ +   +D++ DN   + G   +AA G +          D +
Sbjct: 451 VTAKN-------DNGRLVLTSANGQDIKLDNGSGVTGQGALAAVGLNSGTTKAGLVADTS 503

Query: 197 FTLKDIDGNDQTITVNAKEGDDIEEVATYINGQTDMVKASV---NEKGQLQIFAGNNKVT 253
            +L  ++       V  K+GDD++ +A  IN  +  V ASV        L +FA  +   
Sbjct: 504 ISLNGVE-------VKFKKGDDMDSIAASINAASTGVNASVVVNAGSSTLSLFADQDITV 556

Query: 254 GDVAFSGGLAG-ALNMQAGTAE------TVDTIDVTSVGGAQQSVAVIDSALKYVDSHRA 306
            D +   GLA   L   AG         TV  +++T    AQQ++ V+D A++ +DS R+
Sbjct: 557 ADGSNGTGLAALGLTAVAGKTSAVEMESTVSNLNITDAQSAQQAIQVLDGAMQSLDSQRS 616

Query: 307 ELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAK 366
           +LGA QNRF+  ++NL +I+EN  A++SRI+D DFA ET  L+K Q L QAS+++L+QA 
Sbjct: 617 QLGAVQNRFDSTVANLQSISENSTAARSRIQDADFAAETAELSKQQTLQQASTAILSQAN 676

Query: 367 QAPNAALSLLG 377
           Q P++ L LLG
Sbjct: 677 QLPSSVLKLLG 687