Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., Flagellin protein FlaA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  161 bits (407), Expect = 2e-44
 Identities = 121/375 (32%), Positives = 181/375 (48%), Gaps = 84/375 (22%)

Query: 3   VNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLD 62
           ++++TN A+++ Q  L        TSM RL +GF+INSA DDAAGLQI+ R++ QSRG+ 
Sbjct: 2   LSLHTNYASLSTQNALGATQKTLTTSMSRLGTGFRINSAMDDAAGLQIATRMDAQSRGMA 61

Query: 63  VAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALNDE 122
           VA+RN  +GIS+ QTAEGA  E TNI+ RM+DL+ ++ANGS ++ +R A+Q E   L +E
Sbjct: 62  VAMRNTQNGISMMQTAEGAFKEMTNIVTRMKDLATEAANGSATQEDRDALQAEFDQLGEE 121

Query: 123 LNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAEGK 182
           L          GN + N +F+          GEA  L  KD  +     G  ++      
Sbjct: 122 L----------GNIMTNSSFA----------GEA--LFNKDGTAGKLGAGAVTFQIGATT 159

Query: 183 DKDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDDIEEV-ATYINGQTDMVKASVNEKG 241
            +  +V     D+T  L D+             G D++ V A+Y  G T           
Sbjct: 160 AETMEV-----DVTDALADL-------------GTDLDAVVASYTAGVT----------- 190

Query: 242 QLQIFAGNNKVTGDVAFSGGLAGALNMQAGTAETVDTIDVTSVGGAQQSVAVIDSALKYV 301
                                       AGT  +    ++ +   A  ++  +   L  +
Sbjct: 191 ----------------------------AGTPGS----EIAAAADANTAIDDLADVLDAI 218

Query: 302 DSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSSV 361
            + RA+LGA  NR     +NL N     +ASK RI D D+A ET  +TK+Q+L QAS+S+
Sbjct: 219 GAVRAQLGASSNRLESVYNNLGNQRTQTDASKGRIMDVDYAAETANMTKNQMLLQASTSM 278

Query: 362 LAQAKQAPNAALSLL 376
           L Q+       +SL+
Sbjct: 279 LKQSSSMSQLVMSLM 293