Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., Flagellar biosynthesis protein FliC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  154 bits (389), Expect = 5e-42
 Identities = 109/305 (35%), Positives = 160/305 (52%), Gaps = 21/305 (6%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA  +NTN  ++  Q  L  + +A  T++ERLSSG +INSAKDDAAG  I+NR     +G
Sbjct: 1   MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L  A RNANDGISIAQT EGA+NE  N LQR+R+L++QSAN +NS+S+  +IQ EIT   
Sbjct: 61  LTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRL 120

Query: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAE 180
           +E++R++  T F G K+L    +T + Q+GA++GE + + LK + S    +  T  V  +
Sbjct: 121 NEIDRVSGQTQFNGVKVL-AQDNTLTIQVGANDGETIDIDLKQINSQTLGL-DTLNVQQK 178

Query: 181 GKDKDWKVQ-AGANDITFTLKD---------IDGNDQTITVNAKEGDDIEEVATYINGQT 230
            K  D      G  D T  L +         + G DQ I  + K  D   +    +    
Sbjct: 179 YKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVT--- 235

Query: 231 DMVKASVNEKGQLQIFAGNNKVTGDVAFSGGLAGAL--NMQAGTAETVDTIDVTSVGGAQ 288
             V     + G  ++    +K  G+V  +GG    L   + A   E V  + V +    +
Sbjct: 236 --VTGGTGKDGYYEVSV--DKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTE 291

Query: 289 QSVAV 293
              A+
Sbjct: 292 AKAAL 296



 Score = 92.0 bits (227), Expect = 3e-23
 Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 7/181 (3%)

Query: 203 DGNDQTIT--VNAKEGDDIEEVATYINGQ-----TDMVKASVNEKGQLQIFAGNNKVTGD 255
           D N +TI   +  K GDD        +G      T         K  L    G +  T  
Sbjct: 314 DNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEV 373

Query: 256 VAFSGGLAGALNMQAGTAETVDTIDVTSVGGAQQSVAVIDSALKYVDSHRAELGAFQNRF 315
           V+  G    A   +    +    +   +    +  +  ID+AL  VD+ R++LGA QNRF
Sbjct: 374 VSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLGAVQNRF 433

Query: 316 NHAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPNAALSL 375
           N AI+NL N   N+ +++SRI+D+D+A E + ++++QIL QA +SVLAQA Q P   LSL
Sbjct: 434 NSAITNLGNTVNNLTSARSRIEDSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSL 493

Query: 376 L 376
           L
Sbjct: 494 L 494