Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 585 a.a., flagellin FliC from Escherichia coli ECRC98

 Score =  147 bits (372), Expect = 6e-40
 Identities = 107/300 (35%), Positives = 153/300 (51%), Gaps = 33/300 (11%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA  +NTN  ++  Q  +    +A  +S+ERLSSG +INSAKDDAAG  I+NR     +G
Sbjct: 1   MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L  A RNANDGIS+AQT EGA++E  N LQR+R+L++Q+  G+NS S+  +IQ+EI +  
Sbjct: 61  LTQAARNANDGISVAQTTEGALSEINNNLQRIRELTVQATTGTNSDSDLDSIQDEIKSRL 120

Query: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAE 180
           DE++R++  T F G  +L    S K  Q+GA++GE + + LK + SD   + G +     
Sbjct: 121 DEIDRVSGQTQFNGVNVLAKDGSMK-IQVGANDGETITIDLKKIDSDTLGLNGFN---VN 176

Query: 181 GKDKDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDDIEEVATYINGQTDMVKASVNEK 240
           GK                         TIT  A    D+      +N  T +      E 
Sbjct: 177 GKG------------------------TITNKAATVSDLTSAGAKLNTTTGLYDLK-TEN 211

Query: 241 GQLQIFAGNNKV-TGDVAFSGGLAGALNMQAGTAETVDTIDVTSVGGAQQSVAVIDSALK 299
             L   A  +K+  GD    GG+    N ++G   T  +   T V  A Q+    DSA K
Sbjct: 212 TLLTTDAAFDKLGNGDKVTVGGVDYTYNAKSGDFTTTKSTAGTGVDAAAQAA---DSASK 268



 Score = 99.4 bits (246), Expect = 2e-25
 Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 16/215 (7%)

Query: 172 GGTSYVAAEGKD---KDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDD-----IEEVA 223
           GG +Y A   KD    + K  A  + ITF    +    +TI   A E  D     +++  
Sbjct: 375 GGITYQATVSKDVVLSETKAAAATSSITFNSGVLS---KTIGFTAGESSDAAKSYVDDKG 431

Query: 224 TYINGQTDMVKASVNEKGQLQIFAGNNKVTG-DVAFSGGLAGALNMQAGTAETVDTIDVT 282
              N     V  SVN+       AG    T  +  ++  +  A+N+ +    T +T   T
Sbjct: 432 GITNVADYTVSYSVNKDNGSVTVAGYASATDTNKDYAPAIGTAVNVNSAGKITTET---T 488

Query: 283 SVGGAQQS-VAVIDSALKYVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDF 341
           S G A  + +A +D A+  +D  R+ LGA QNR + A++NL+N   N++ ++SRI+D D+
Sbjct: 489 SAGSATTNPLAALDDAISSIDKFRSSLGAIQNRLDSAVTNLNNTTTNLSEAQSRIQDADY 548

Query: 342 AKETTALTKSQILSQASSSVLAQAKQAPNAALSLL 376
           A E + ++K+QI+ QA +SVLA+A Q P   LSLL
Sbjct: 549 ATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL 583