Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 266 a.a., Flagellin from Alteromonas macleodii MIT1002

 Score =  100 bits (248), Expect = 6e-26
 Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 12/260 (4%)

Query: 8   NVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVAVRN 67
           NV A +    +      +    E+L+SG K+NSA D+AA  QI +R   Q  G   A++N
Sbjct: 3   NVGADSVSAQIGQIQQKEDNLFEKLASGKKVNSALDEAAAQQIIDRFTTQVEGNRQAIKN 62

Query: 68  ANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALNDELNRIA 127
             DGIS+AQ AEG ++   + + R+R+LSLQS +G  + S+R AIQ EIT L   + +  
Sbjct: 63  LYDGISVAQIAEGGLSTINDDVNRIRELSLQSGSGILNDSDRRAIQSEITQLQKNIVQSI 122

Query: 128 ETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNR------MMGGTSYV-AAE 180
           E T+F G  LL+   S + FQ G +  +++ +  +D+ +         +  GTS   A  
Sbjct: 123 EQTNFAGKPLLSDAGSLE-FQAGVNANQSISVNTQDVAAQLNDVFAIDITSGTSVEDALN 181

Query: 181 GKDKDWKVQAGA-NDITFTLKDIDGNDQTI---TVNAKEGDDIEEVATYINGQTDMVKAS 236
             D   +   GA  +   +L  ++   +++    VNA E     E   Y    ++     
Sbjct: 182 AADSALESIGGARGEFGASLNRLESTARSLVKGNVNAAEAKSRIESVDYAQAASERAIND 241

Query: 237 VNEKGQLQIFAGNNKVTGDV 256
           +  +  L + A  N+    V
Sbjct: 242 IRSQASLTVQAQANQQQSQV 261



 Score = 63.5 bits (153), Expect = 6e-15
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 234 KASVNEKGQLQIFAGNNKVTGDVAFSGGLAGALNMQAGTAETVDTIDVTSVGGAQQSVAV 293
           K  +++ G L+  AG N        +  +A  LN        V  ID+TS    + ++  
Sbjct: 130 KPLLSDAGSLEFQAGVNANQSISVNTQDVAAQLN-------DVFAIDITSGTSVEDALNA 182

Query: 294 IDSALKYVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTALTKSQI 353
            DSAL+ +   R E GA  NR      +L   N N   +KSRI+  D+A+  +    + I
Sbjct: 183 ADSALESIGGARGEFGASLNRLESTARSLVKGNVNAAEAKSRIESVDYAQAASERAINDI 242

Query: 354 LSQASSSVLAQAKQAPNAALSLL 376
            SQAS +V AQA Q  +  LSLL
Sbjct: 243 RSQASLTVQAQANQQQSQVLSLL 265