Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., A-type flagellin from Alteromonas macleodii MIT1002

 Score =  256 bits (653), Expect = 8e-73
 Identities = 159/377 (42%), Positives = 223/377 (59%), Gaps = 54/377 (14%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTNV+++ AQR L  + N+   + ERLSSG +IN+A DDAAGLQISNRL  Q  G
Sbjct: 1   MALTVNTNVSSLNAQRQLMNSGNSLDKAFERLSSGLRINNASDDAAGLQISNRLEGQING 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L+   RNANDGIS+AQTAEGAM + T+  QR+R L+ Q+ANGSN+  +R+AIQEE+ AL 
Sbjct: 61  LNQGNRNANDGISVAQTAEGAMEQITDSFQRVRTLAAQAANGSNTDEDRLAIQEEMRALM 120

Query: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAE 180
           +E+NR+A  T+FGG  LL+GT++   FQ+G+D  + +  +++++       G  + ++A 
Sbjct: 121 EEVNRVAADTTFGGENLLDGTYN-GVFQVGSDAVQTIGFSMQNVG------GSANTISAA 173

Query: 181 GKDKDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDDIEEVATYINGQTDMVKASVNEK 240
           G               FTL  I      IT         E ++  + G +D +       
Sbjct: 174 G--------------GFTLSGIASIASAITGG-------EALSAKLEGLSDSL------- 205

Query: 241 GQLQIFAGNNKVTGDVAFSGGLAGALNMQAGTAETVDTIDVTSVGGAQQSVAVIDSALKY 300
                  G   + GD  F+G    +             I V++   +Q  +A +DS +  
Sbjct: 206 -------GTANLAGDFDFAGVFVAS------------GISVSTQANSQAVLAGMDSLIAV 246

Query: 301 VDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSS 360
           VD  RAELGA QNRF   I+N  NI+EN++A++SRI+D DFA ET  LT++QIL QAS +
Sbjct: 247 VDKKRAELGAVQNRFQSTINNQANISENLSAAQSRIRDADFAAETAKLTQNQILQQASQA 306

Query: 361 VLAQAKQAPNAALSLLG 377
           +LAQA Q P AALSLLG
Sbjct: 307 ILAQANQRPQAALSLLG 323