Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., A-type flagellin from Alteromonas macleodii MIT1002

 Score =  249 bits (636), Expect = 7e-71
 Identities = 160/376 (42%), Positives = 220/376 (58%), Gaps = 54/376 (14%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           M++ VNTNV+++ AQR +  ++     + ERLSSG +INSA DDAAGLQIS+RL  Q  G
Sbjct: 1   MSLIVNTNVSSLNAQRQMMSSSLGLDQAFERLSSGLRINSAADDAAGLQISDRLQSQILG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L+   RNANDGIS+AQTAEGAM E T+  QR+R L+ Q+ANGSN+  +R+AIQEEI AL 
Sbjct: 61  LNQGNRNANDGISLAQTAEGAMEEITSSFQRVRTLASQAANGSNTDEDRLAIQEEIRALM 120

Query: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAE 180
            E+NRIA  T+FGG  LL+GT++   FQ+G+D  + +  +++++       G  + ++A 
Sbjct: 121 TEVNRIAGDTTFGGENLLDGTYN-GVFQVGSDAVQTIGFSMQNVG------GSANTISAA 173

Query: 181 GKDKDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDDIEEVATYINGQTDMVKASVNEK 240
           G               FTL  I      IT         E ++  + G +D +       
Sbjct: 174 G--------------GFTLSGIASIASAITGG-------EALSAKLEGLSDSL------- 205

Query: 241 GQLQIFAGNNKVTGDVAFSGGLAGALNMQAGTAETVDTIDVTSVGGAQQSVAVIDSALKY 300
                  G   + GD  F+G    +             I V++   +Q  +A +DS +  
Sbjct: 206 -------GTANLAGDFDFAGVFVAS------------GISVSTQANSQAVLAGMDSLIAV 246

Query: 301 VDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSS 360
           VD  RAELGA QNRF   I+N  NI+EN++A+KSRIKD DFA ET  LT++QIL QAS +
Sbjct: 247 VDKKRAELGAVQNRFQSTINNQANISENLSAAKSRIKDADFAAETAKLTQNQILQQASQT 306

Query: 361 VLAQAKQAPNAALSLL 376
           +LAQA Q P AALSLL
Sbjct: 307 ILAQANQRPQAALSLL 322