Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., branched-chain alpha-keto acid dehydrogenase subunit E2 from Pseudomonas simiae WCS417

 Score =  200 bits (509), Expect = 6e-56
 Identities = 115/262 (43%), Positives = 171/262 (65%), Gaps = 12/262 (4%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MA+ VNTN++++T Q  L  AA+ +Q SM+RLS+G  INSA+D+A+GLQISNRLTSQ  G
Sbjct: 1   MALTVNTNIASITTQNGLGKAANSLQTSMQRLSTGLSINSAKDNASGLQISNRLTSQING 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
           L  AVKNANDGISIAQTAEGAM  +T+ILQ+MR LAL S+ GS S ++R + QEE  AL 
Sbjct: 61  LGQAVKNANDGISIAQTAEGAMQASTDILQKMRTLALSSATGSLSDADRTSNQEEYQALT 120

Query: 121 DELNRIAETTSFGGNKLLNGSFGSKSFQIGADSGEAVMLSMGSMRSDTQAMGGKSYRA-Q 179
            EL RI++TT+FGG KLL+GS+G+K+ Q+GA++ E + LS+ ++ ++   +G +  ++  
Sbjct: 121 SELTRISQTTTFGGQKLLDGSYGTKAIQVGANANETINLSLDNVAANN--IGSQQIKSVG 178

Query: 180 EGKAADWRVGAATDLTLSYTNKQGEAREVTINAKQGDDLEELATYINGQTEDVKASVGED 239
              +A    G    +T       G+   VT+ A  G   + +A+ +NG    + AS   +
Sbjct: 179 VAPSASGVAGGVIGIT-----GNGQTNSVTVAA--GSSAKTIASQLNGAVGGLSASASTE 231

Query: 240 GKLQLFASSQKVNG--DVTIGG 259
            +  + A+++       +T+GG
Sbjct: 232 AQFVVGAAAKTAPATFSMTVGG 253



 Score =  105 bits (263), Expect = 2e-27
 Identities = 113/418 (27%), Positives = 176/418 (42%), Gaps = 58/418 (13%)

Query: 4   NVNTNVS-AMTAQRYLNGAADGMQKSME-RLSSGYKINSARDDAAGLQISNRLTSQSRGL 61
           N N  +S A TA+  +  + D +QK     LSS     S  D  +  +    LTS+   +
Sbjct: 67  NANDGISIAQTAEGAMQASTDILQKMRTLALSSATGSLSDADRTSNQEEYQALTSELTRI 126

Query: 62  DMAVK-------NANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSER-RAIQ 113
                       + + G    Q    A NET N       L+L +   +N  S++ +++ 
Sbjct: 127 SQTTTFGGQKLLDGSYGTKAIQVGANA-NETIN-------LSLDNVAANNIGSQQIKSVG 178

Query: 114 EEVSAL-----------NDELNRIAETTSFGGNKL---LNGSFGSKS--------FQIGA 151
              SA            N + N +          +   LNG+ G  S        F +GA
Sbjct: 179 VAPSASGVAGGVIGITGNGQTNSVTVAAGSSAKTIASQLNGAVGGLSASASTEAQFVVGA 238

Query: 152 DSGEAVMLSMGSMRSDTQAMGGKSYRAQEGKAADWRVGAATDLTLSYTNKQGEAREVTIN 211
            +  A      ++   T    G +  A     AD     A  L +S  N     + +++ 
Sbjct: 239 AAKTAPATFSMTVGGQTTTFTGVTDTAS---LADQLKSNAAKLGIS-VNFDEAKQSLSVK 294

Query: 212 AKQGDDLE-ELATYINGQTEDVKASVGEDGKLQLFASSQKVNGDVTI---------GGGL 261
           +  G++LE   AT     T   K   G  G     A+  K  G V +         G G+
Sbjct: 295 SDSGENLEFSAATAAGSITVATKDGSGSYGSAVAIANGLKATGAVNLDSSKGYALNGAGV 354

Query: 262 GGEIGFD----AGRNVTVADVNVSTVAGSQEAVSILDGALKAVDSQRASLGAFQNRFGHA 317
            G         A    +VA  +V++   +Q A++++D A+  +DS R+ LGA QNR    
Sbjct: 355 TGLFAATGTAAASAKTSVAQTDVTSAFNAQSAIAVIDKAIGGIDSVRSGLGAVQNRLTTT 414

Query: 318 ISNLDNVNENVNASRSRIRDTDYARETTAMTKAQILQQASTSVLAQAKQSPSAALSLL 375
           + NL N+ +N  A+RS ++DTD+A ET  +TK Q LQ A+T++L+QA Q PSA L LL
Sbjct: 415 VDNLTNIQKNSTAARSTVQDTDFAAETAELTKQQTLQSAATAILSQANQLPSAVLKLL 472