Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., Flagellin FliC from Variovorax sp. SCN45

 Score =  152 bits (383), Expect = 3e-41
 Identities = 106/330 (32%), Positives = 170/330 (51%), Gaps = 39/330 (11%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MA  +NTN  ++  Q  LN +   +  ++ RLSSG +INSA+DDAAG  I+NR T+  +G
Sbjct: 1   MAQVINTNSLSLLTQNNLNKSQAALNSAIGRLSSGMRINSAKDDAAGQAIANRFTANIKG 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
           L  A +NANDGISIAQT EGA+ E  N LQR+R+L++Q+  G+NS+++  +IQ E++   
Sbjct: 61  LTQATRNANDGISIAQTTEGALTEVNNNLQRIRELSVQAGTGTNSATDLDSIQGEITQRL 120

Query: 121 DELNRIAETTSFGGNKLLNGSFGSKSFQIGADSGEAVMLSMGSMRSDTQAMGGKSYRAQE 180
           DE+NR++  T F G K+L+ + G  + Q+GA+ GE + + +  + + T  + G +    +
Sbjct: 121 DEINRVSNQTQFNGVKVLSANAGKLTVQVGANDGETIDIDLQEISAKTLGLDGFNVNG-K 179

Query: 181 GKAADWRVGAATDLTLSYTNKQGEAREVT----INAKQG-DDLEELATYINGQTE----- 230
           G +A+ +     DLT +     G     T    + A+Q  D +++  T + G T      
Sbjct: 180 GVSANTKAN-VNDLTKAGATGTGPYTVTTSFAKVTAEQAVDAMQDGNTAVVGATTYKYDA 238

Query: 231 -----DVKASVGEDGKLQLFASS------QKVNGDVTIGGG-------------LGGEIG 266
                   A+V   G    FA++       K  G  T   G             +GG+  
Sbjct: 239 TAGNFTTTATVATGGPTTAFAATLLPTAGNKFTGTFTGASGSTNFEVDSAGAITIGGQAA 298

Query: 267 FDAGRNVTVADVNVSTVAGSQEAVSILDGA 296
           + +G N+T  +V     A    A ++  GA
Sbjct: 299 YISGGNLTTNNVGAPPAA---TAATLFGGA 325



 Score = 97.1 bits (240), Expect = 1e-24
 Identities = 102/365 (27%), Positives = 157/365 (43%), Gaps = 58/365 (15%)

Query: 67  NANDGISIAQTAEGAMNETTNILQRMRDLALQS-SNGSNSSSERRAIQEEVSALNDELNR 125
           N ND      T  G    TT+  +   + A+ +  +G+ +       + + +A N     
Sbjct: 188 NVNDLTKAGATGTGPYTVTTSFAKVTAEQAVDAMQDGNTAVVGATTYKYDATAGNFTTTA 247

Query: 126 IAET----TSFG-------GNKL---LNGSFGSKSFQIGADS-----GEAVMLSMGSMRS 166
              T    T+F        GNK      G+ GS +F++ +       G+A  +S G++ +
Sbjct: 248 TVATGGPTTAFAATLLPTAGNKFTGTFTGASGSTNFEVDSAGAITIGGQAAYISGGNLTT 307

Query: 167 DTQAMG----------------GKSYRAQEGKAADWRVGAATDLTLSYTNKQGEAREV-- 208
           +                     G S     G   ++  GA +  T + T  + + +    
Sbjct: 308 NNVGAPPAATAATLFGGADTGTGASSIKLNGTTYNFAAGANSGFTYTKTVSKDDVKTAVA 367

Query: 209 ----TINAKQGDDLEELA-TYINGQTEDVKASVGEDGKLQLFASS------QKVNGDVTI 257
               T+N  QG     +      GQ+ D    +  D ++   AS         VNG+VT+
Sbjct: 368 GAASTVNLGQGIFASTVTFAAAGGQSSDTY--MDNDKEMTKTASYTTDYAVNAVNGEVTV 425

Query: 258 GGGLG-----GEIGFDAGRNVTVADVNVSTVAGSQ--EAVSILDGALKAVDSQRASLGAF 310
               G      ++G  A  N        +T  G++  + ++ LD AL  VD+ R SLGA 
Sbjct: 426 ASTTGTGKYAAQVGATAYINSAGKLTTDTTSKGTKTTDPLAALDAALAKVDTLRGSLGAV 485

Query: 311 QNRFGHAISNLDNVNENVNASRSRIRDTDYARETTAMTKAQILQQASTSVLAQAKQSPSA 370
           QNRF   I+NL     N+++SRSRI D DYA E + MT+AQILQQA TSVL+QA Q+   
Sbjct: 486 QNRFDSVIANLGTTVTNLSSSRSRIEDADYAVEVSNMTRAQILQQAGTSVLSQANQTTQG 545

Query: 371 ALSLL 375
            LSLL
Sbjct: 546 VLSLL 550