Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 266 a.a., Flagellin FlaB1 from Methylophilus sp. DMC18

 Score =  146 bits (368), Expect = 7e-40
 Identities = 80/193 (41%), Positives = 121/193 (62%), Gaps = 6/193 (3%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MA  +NTN+S++ AQR LN +  G+ +S++RLSSG ++NSA+DDAAGL I+ R+ SQ RG
Sbjct: 1   MAAVINTNISSLNAQRNLNASQAGLNQSIQRLSSGLRVNSAKDDAAGLAIATRMDSQVRG 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
            D+A++N+ND IS  Q  EG +++ T++LQRMR+LA+Q++NGS  S +R  +  E + L 
Sbjct: 61  NDVAIRNSNDAISYLQVTEGGLSKATDVLQRMRELAVQAANGSYGSGDRANLDTEFTQLT 120

Query: 121 DELNRIAETTSFGGNKLLNGSFGSKSFQIGADSGEAVMLSMGSMRSDTQAMGGKSYRAQE 180
            EL R++ +T F G  +  G     +FQIG+ S + + +S  +  S T    G    A  
Sbjct: 121 AELTRLSTSTQFNGLNVFGGP--GYTFQIGSGSADTLQVSSVTAASIT----GNVQTASA 174

Query: 181 GKAADWRVGAATD 193
             AA   + A  D
Sbjct: 175 ATAAITAIDAQLD 187



 Score =  102 bits (253), Expect = 2e-26
 Identities = 85/275 (30%), Positives = 136/275 (49%), Gaps = 26/275 (9%)

Query: 112 IQEEVSALNDELNRIAETTSFGGNKLLNGSFG--SKSFQIGADSGEAVMLSMGSMRSDTQ 169
           I   +S+LN + N  A          LN S    S   ++ +   +A  L++ + R D+Q
Sbjct: 5   INTNISSLNAQRNLNASQAG------LNQSIQRLSSGLRVNSAKDDAAGLAIAT-RMDSQ 57

Query: 170 AMGGKSYRAQEGKAADWRVGAATDLTLSYTNKQGEAREVTINAKQGDDLEELATYINGQT 229
             G          A  +       L+ + T+     RE+ + A  G       +Y +G  
Sbjct: 58  VRGNDVAIRNSNDAISYLQVTEGGLSKA-TDVLQRMRELAVQAANG-------SYGSGDR 109

Query: 230 EDVKASVGE-DGKLQLFASSQKVNGDVTIGG-GLGGEIGFDAGRNVTVADV-------NV 280
            ++     +   +L   ++S + NG    GG G   +IG  +   + V+ V       NV
Sbjct: 110 ANLDTEFTQLTAELTRLSTSTQFNGLNVFGGPGYTFQIGSGSADTLQVSSVTAASITGNV 169

Query: 281 STVAGSQEAVSILDGALKAVDSQRASLGAFQNRFGHAISNLDNVNENVNASRSRIRDTDY 340
            T + +  A++ +D  L +V++ RASLGA+QNRF   IS+L    ENV+A++SRI D D+
Sbjct: 170 QTASAATAAITAIDAQLDSVNTSRASLGAYQNRFEAVISSLQVNIENVSAAKSRIMDADF 229

Query: 341 ARETTAMTKAQILQQASTSVLAQAKQSPSAALSLL 375
           A ET  MT+ QILQQA T++LAQA Q P++ +SL+
Sbjct: 230 ASETAKMTRNQILQQAGTAMLAQANQLPNSVMSLI 264