Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., Flagellar biosynthesis protein FliC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  155 bits (391), Expect = 3e-42
 Identities = 109/304 (35%), Positives = 165/304 (54%), Gaps = 13/304 (4%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MA  +NTN  ++  Q  LN +   +  ++ERLSSG +INSA+DDAAG  I+NR T+  +G
Sbjct: 1   MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKG 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
           L  A +NANDGISIAQT EGA+NE  N LQR+R+LA+QS+N +NS S+  +IQ E++   
Sbjct: 61  LTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRL 120

Query: 121 DELNRIAETTSFGGNKLLNGSFGSKSFQIGADSGEAVMLSMGSMRSDTQAMGGKSYRAQE 180
           +E++R++  T F G K+L     + + Q+GA+ GE + + +  + S T  +   + + Q+
Sbjct: 121 NEIDRVSGQTQFNGVKVL-AQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQ-QK 178

Query: 181 GKAADW--RVGAATDLTLSYTNKQGEAREVTINAK----QGDDLEELATYINGQTEDVKA 234
            K +D    V    D T++  N   +A    +        GD   +  T        V  
Sbjct: 179 YKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTG 238

Query: 235 SVGEDGKLQLFASSQKVNGDVTIGGGLGGEI--GFDAGRNVTVADVNVSTVAGSQEAVSI 292
             G+DG  ++  S  K NG+VT+ GG    +  G  A     V +V V+  A   EA + 
Sbjct: 239 GTGKDGYYEV--SVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVAN-ADLTEAKAA 295

Query: 293 LDGA 296
           L  A
Sbjct: 296 LTAA 299



 Score =  103 bits (256), Expect = 1e-26
 Identities = 71/197 (36%), Positives = 100/197 (50%), Gaps = 15/197 (7%)

Query: 189 GAATDLTLSYTNKQGEAREVTINAKQGDDLEELATYINGQTEDVKASVG------EDGK- 241
           G A+ + +SYT+  G+  +  +  K GDD      Y   Q +D   S+       +DG  
Sbjct: 303 GTASVVKMSYTDNNGKTIDGGLAVKVGDDY-----YSATQNKDGSISINTTKYTADDGTS 357

Query: 242 ---LQLFASSQKVNGDVTIGGGLGGEIGFDAGRNVTVADVNVSTVAGSQEAVSILDGALK 298
              L     +      V+IGG        +        D+  +    ++  +  +D AL 
Sbjct: 358 KTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALA 417

Query: 299 AVDSQRASLGAFQNRFGHAISNLDNVNENVNASRSRIRDTDYARETTAMTKAQILQQAST 358
            VD+ R+ LGA QNRF  AI+NL N   N+ ++RSRI D+DYA E + M++AQILQQA T
Sbjct: 418 QVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSARSRIEDSDYATEVSNMSRAQILQQAGT 477

Query: 359 SVLAQAKQSPSAALSLL 375
           SVLAQA Q P   LSLL
Sbjct: 478 SVLAQANQVPQNVLSLL 494