Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., flagellin (NCBI) from Escherichia coli BW25113

 Score =  151 bits (382), Expect = 3e-41
 Identities = 121/385 (31%), Positives = 182/385 (47%), Gaps = 42/385 (10%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MA  +NTN  ++  Q  +N     +  S+ERLSSG +INSA+DDAAG  I+NR TS  +G
Sbjct: 1   MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKG 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
           L  A +NANDGIS+AQT EGA++E  N LQR+R+L +Q++ G+NS S+  +IQ+E+ +  
Sbjct: 61  LTQAARNANDGISVAQTTEGALSEINNNLQRVRELTVQATTGTNSESDLSSIQDEIKSRL 120

Query: 121 DELNRIAETTSFGGNKLLNGSFGSKSFQIGADSGEAVMLSMGSMRSDTQAMGGKSYRAQE 180
           DE++R++  T F G  +L    GS   Q+GA+  + + + +  + + T  + G S +  +
Sbjct: 121 DEIDRVSGQTQFNGVNVL-AKNGSMKIQVGANDNQTITIDLKQIDAKTLGLDGFSVKNND 179

Query: 181 GKAADWRV---GAATDLTLSYTNKQGEAREVTINAKQGDDLEELATYINGQTEDVKASVG 237
                  V   GA T   +  T         T          E     NG     K + G
Sbjct: 180 TVTTSAPVTAFGATTTNNIKLTGITLSTEAATDTGGTNPASIEGVYTDNGNDYYAKITGG 239

Query: 238 E-DGKLQLFASSQKVNGDVTIGGGLGGEIGFDAGRNVTVADVNVSTVAGSQEAVSILDGA 296
           + DGK   +A +   +G VT+  G        A  N TV D N +      +A +I  G 
Sbjct: 240 DNDGK--YYAVTVANDGTVTMATG--------ATANATVTDANTT------KATTITSGG 283

Query: 297 LKAVDSQRASLGAFQNRFGHAISNLDNVNENVNASRSRIRDTD-----------YARETT 345
                          N  G A +NL  V+  V    S+  DTD           YA +  
Sbjct: 284 TPV---------QIDNTAGSATANLGAVS-LVKLQDSKGNDTDTYALKDTNGNLYAADVN 333

Query: 346 AMTKAQILQQASTSVLAQAKQSPSA 370
             T A  ++  + +  + A  SP+A
Sbjct: 334 ETTGAVSVKTITYTDSSGAASSPTA 358



 Score =  108 bits (269), Expect = 4e-28
 Identities = 88/253 (34%), Positives = 126/253 (49%), Gaps = 36/253 (14%)

Query: 127 AETTSFGGNKL-LNGSFGSKSFQIGADSGEAVMLSMGSMRSDTQAM---GGKSYRAQEGK 182
           A T + GG  + ++ + GS +  +GA S   +  S G+  +DT A+    G  Y A   +
Sbjct: 276 ATTITSGGTPVQIDNTAGSATANLGAVSLVKLQDSKGN-DTDTYALKDTNGNLYAADVNE 334

Query: 183 AADWRVGAATDLTLSYTNKQGEAREVTINAKQGDDLEELATYINGQTEDVKASVGEDGKL 242
                 GA +  T++YT+  G A   T     GDD +     I+G+T D           
Sbjct: 335 TT----GAVSVKTITYTDSSGAASSPTAVKLGGDDGKTEVVDIDGKTYD----------- 379

Query: 243 QLFASSQKVNGDVTIGGGLGGEIGFDAGRNVTVADVNVSTVAGSQEAVSILDGALKAVDS 302
                S  +NG     G L  + G  AG     A  N  T     + +  LD A+ +VD 
Sbjct: 380 -----SADLNG-----GNL--QTGLTAGGEALTAVANGKTT----DPLKALDDAIASVDK 423

Query: 303 QRASLGAFQNRFGHAISNLDNVNENVNASRSRIRDTDYARETTAMTKAQILQQASTSVLA 362
            R+SLGA QNR   A++NL+N   N++ ++SRI+D DYA E + M+KAQI+QQA  SVLA
Sbjct: 424 FRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLA 483

Query: 363 QAKQSPSAALSLL 375
           +A Q P   LSLL
Sbjct: 484 KANQVPQQVLSLL 496