Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region from Enterobacter asburiae PDN3

 Score =  167 bits (423), Expect = 3e-46
 Identities = 88/193 (45%), Positives = 131/193 (67%), Gaps = 11/193 (5%)

Query: 5   VNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRGLDMA 64
           +NTN+ ++T Q  LN +   +  ++ERLSSG +INSA+DDAAG  I+NR+TSQ +G+  A
Sbjct: 4   INTNLMSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTSQIKGMTQA 63

Query: 65  VKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALNDELN 124
            +NANDGIS+AQTAEG++NE  N LQR+R+LA+Q+SNG+NS+S+  ++Q+EV+A   E+N
Sbjct: 64  ARNANDGISMAQTAEGSLNEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARLAEIN 123

Query: 125 RIAETTSFGGNKLLNGSFGSK---SFQIGADSGEAVMLSMGSMRSDTQAMGGKSYRAQEG 181
           R+A  T F G KLL+G+ G+      Q+G + G+ + L +   ++DT  +G         
Sbjct: 124 RVAGKTDFNGIKLLDGTAGTAGKVKIQVGVNDGDTIDLDLSGAKADTTTLG--------V 175

Query: 182 KAADWRVGAATDL 194
            A D +   ATDL
Sbjct: 176 NAIDLKAMTATDL 188



 Score =  100 bits (248), Expect = 6e-26
 Identities = 69/188 (36%), Positives = 100/188 (53%), Gaps = 12/188 (6%)

Query: 200 NKQGEAREVTINAKQG----DDLEELATYINGQTEDVKASVGED--GKLQLFASSQKVNG 253
           N     RE+ + A  G     DL  L   +  +  ++    G+     ++L   +    G
Sbjct: 86  NNLQRVRELAVQASNGTNSTSDLASLQDEVTARLAEINRVAGKTDFNGIKLLDGTAGTAG 145

Query: 254 DVTIGGGL--GGEIGFD---AGRNVTVADVN-VSTVAGSQEAVSILDGALKAVDSQRASL 307
            V I  G+  G  I  D   A  + T   VN +   A +   +  +D A+  VD+ R+ L
Sbjct: 146 KVKIQVGVNDGDTIDLDLSGAKADTTTLGVNAIDLKAMTATDLDTIDKAIAKVDTARSGL 205

Query: 308 GAFQNRFGHAISNLDNVNENVNASRSRIRDTDYARETTAMTKAQILQQASTSVLAQAKQS 367
           GA QNRF  AI+NL+N + N++A++SRI+D DYA E + M++AQILQQA TSVL+QA Q 
Sbjct: 206 GAVQNRFTSAINNLNNTSNNLSAAQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQV 265

Query: 368 PSAALSLL 375
           P   LSLL
Sbjct: 266 PQTVLSLL 273