Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 266 a.a., Flagellin from Alteromonas macleodii MIT1002

 Score =  106 bits (265), Expect = 6e-28
 Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 13/260 (5%)

Query: 8   NVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRGLDMAVKN 67
           NV A +    +           E+L+SG K+NSA D+AA  QI +R T+Q  G   A+KN
Sbjct: 3   NVGADSVSAQIGQIQQKEDNLFEKLASGKKVNSALDEAAAQQIIDRFTTQVEGNRQAIKN 62

Query: 68  ANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALNDELNRIA 127
             DGIS+AQ AEG ++   + + R+R+L+LQS +G  + S+RRAIQ E++ L   + +  
Sbjct: 63  LYDGISVAQIAEGGLSTINDDVNRIRELSLQSGSGILNDSDRRAIQSEITQLQKNIVQSI 122

Query: 128 ETTSFGGNKLLNGSFGSKSFQIGADSGEAVMLS---MGSMRSDTQAMGGKSYRAQEG--K 182
           E T+F G  LL+ + GS  FQ G ++ +++ ++   + +  +D  A+   S  + E    
Sbjct: 123 EQTNFAGKPLLSDA-GSLEFQAGVNANQSISVNTQDVAAQLNDVFAIDITSGTSVEDALN 181

Query: 183 AADWRV----GAATDLTLSYTNKQGEAREV---TINAKQGDDLEELATYINGQTEDVKAS 235
           AAD  +    GA  +   S    +  AR +    +NA +     E   Y    +E     
Sbjct: 182 AADSALESIGGARGEFGASLNRLESTARSLVKGNVNAAEAKSRIESVDYAQAASERAIND 241

Query: 236 VGEDGKLQLFASSQKVNGDV 255
           +     L + A + +    V
Sbjct: 242 IRSQASLTVQAQANQQQSQV 261



 Score = 59.3 bits (142), Expect = 1e-13
 Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 12/129 (9%)

Query: 259 GGLGGEIGFDAGRNVTVADVNVSTVAGSQEAVSILDG-----ALKAVDSQRASLGAFQNR 313
           G L  + G +A ++++V   +V+       A+ I  G     AL A DS   S+G  +  
Sbjct: 137 GSLEFQAGVNANQSISVNTQDVAAQLNDVFAIDITSGTSVEDALNAADSALESIGGARGE 196

Query: 314 FGHAISNLDN-----VNENVNAS--RSRIRDTDYARETTAMTKAQILQQASTSVLAQAKQ 366
           FG +++ L++     V  NVNA+  +SRI   DYA+  +      I  QAS +V AQA Q
Sbjct: 197 FGASLNRLESTARSLVKGNVNAAEAKSRIESVDYAQAASERAINDIRSQASLTVQAQANQ 256

Query: 367 SPSAALSLL 375
             S  LSLL
Sbjct: 257 QQSQVLSLL 265