Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., flagellar filament capping protein FliD from Rhodanobacter sp000427505 FW510-R12

 Score =  110 bits (275), Expect = 1e-28
 Identities = 75/247 (30%), Positives = 120/247 (48%), Gaps = 12/247 (4%)

Query: 409 AALNAAQSAFDGYGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRN 468
           AALN   +A  G  G+T V +A D+   +DG+A  SS  N +  AI+G+ L L       
Sbjct: 213 AALNYNPAATSG-NGLTVVTAAADAKYSIDGLAA-SSAGNTVSTAIDGLTLNLV-----K 265

Query: 469 QPPAEIGIEYDRERVRNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADS 528
              + + +  D  +  + +   V  YN F    + L   D  +G AG L GD+ +   ++
Sbjct: 266 AGSSTLSVSSDTSKATSALTNLVNTYNSFVGIYQNLTKYDATSGTAGALLGDATLNRINN 325

Query: 529 RLKTVFSSSIEQAPENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFGGNQG 588
            L +V   +   A     +L+  GI+    GTL ++ A L   L++   ++G  FGG  G
Sbjct: 326 TLSSVIGGTANGA-----ALSSIGISLQVDGTLRLDSAKLATALSDGGKQVGSLFGGTNG 380

Query: 589 FAKRVEDAISSMTGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQD 648
           FA ++   ++S  G  G + +R  S+N Q   L + Q +L+ RM SL     A+FSA+  
Sbjct: 381 FAAKLNTPLTSWVGTQGVLASRTSSINRQLSDLANQQTTLNSRMASLTAMYQAQFSALDT 440

Query: 649 ATSKMQS 655
             SK+ S
Sbjct: 441 LMSKLNS 447



 Score =  105 bits (262), Expect = 5e-27
 Identities = 62/203 (30%), Positives = 111/203 (54%), Gaps = 3/203 (1%)

Query: 3   LGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMT 62
           L  +G+ +G D+  +VS++V+A++ P+Q +I ++    +T +SA G++  +L  +++ M 
Sbjct: 16  LTSLGVGSGLDVATLVSQLVAAKKAPQQNQITSQTNTANTQLSALGQVSAALSALQSAMA 75

Query: 63  QFRQEKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVL-DKDAKFG 121
                 AF  R V +S+  V+ A+AT   + G+Y++ V QLA + K +S    +     G
Sbjct: 76  TLTDGSAFTARTVASSDTTVLGASATGTPVNGSYNIVVTQLATALKASSGAFANSSTAVG 135

Query: 122 PGKLHISLGDKSFTLDVQG-NSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIVASNVS 180
            G L I++G +S +L +   N+ L  I   ING  SNPGV A+I+   +G  L+++   +
Sbjct: 136 TGTLTIAVGSQSMSLTLDSTNNSLAAIRDAINGASSNPGVSATIVTGTDGAHLVLSGTRT 195

Query: 181 GKDHSVKMSAQAEPGNPLKQLEY 203
           G  +   +S+    G  L  L Y
Sbjct: 196 GAANGFSVSSSGGDGK-LAALNY 217