Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., Flagellar cap protein FliD from Variovorax sp. SCN45

 Score = 90.5 bits (223), Expect = 2e-22
 Identities = 102/475 (21%), Positives = 197/475 (41%), Gaps = 39/475 (8%)

Query: 185 SVKMSAQAEPGNPLKQLEYKTLEQRVRDLEKARAQAQQLIAPLTPEQQKVAAKVA-EKIG 243
           S+ + A  +    L QL+    +  V    KA++   +L A  T +      + A +K+G
Sbjct: 6   SLGVGANLDLATLLTQLQTAESQPLVALQAKAKSYTSKLSAYGTIQSALGTLQAAAKKLG 65

Query: 244 DAA---RLVDQEVAQEIRSAAQSAQGAAGE-ALNAGELTESAVKAAANAASEAKKYIRPE 299
           D      +        I SA+ +   +AG   ++ G+L ++    +A  A ++K  I   
Sbjct: 66  DPTLFQSVTGTPTVSGILSASSTDVSSAGNYTIDVGQLAQAQTLVSAGQA-DSKTAIGSG 124

Query: 300 DRIPGWTETASGTL---LDSYWEPEEELDAQGQKKAADVPGWSNTASGTLLDSYVTPQEA 356
                +   + GTL      Y       D+    K+  +   +NT  G            
Sbjct: 125 KITIDFGAISGGTLNATTGQYTGATFTADSSQPAKSITIDSSNNTLEG------------ 172

Query: 357 QQKLEQKLAQEKAQIEAAI-RSGKMTPEEAKAQARAKLSPEERAYIEQVEKAQAALNAAQ 415
              +   +   KA + AAI   G  TP      + A  + E+ +    V+   A      
Sbjct: 173 ---IRDAINGAKAGVTAAIVNDGSGTPNRLVLTSSA--TGEKSSMRISVDGDAALQGLLS 227

Query: 416 SAFDGYGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIG 475
           +   G   + +  +AQ++ + ++G+  +S+ N + ++AI+G  LTL G          + 
Sbjct: 228 NDPAGSQNLKQTAAAQNAKLNVNGIDVVSATNTV-KDAIQGTTLTLVGTGKTG-----LA 281

Query: 476 IEYDRERVRNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFS 535
           ++ +   V+  I  FV AYN    T+K L   D  T  A  L GDS +R+  +R++   +
Sbjct: 282 MKENSAGVKTAITDFVKAYNSLQSTAKTLTAYDADTKTAAALVGDSTLRNLQTRIRQALT 341

Query: 536 SSIEQAPENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFF----GGNQGFAK 591
           +       ++K LTE G+   + GTL ++   LD+ L  N   +   F    G   G+ K
Sbjct: 342 TPQAGGANDMKVLTEIGVAFQKDGTLAVDSDKLDKALAANLKGVANLFSSATGSTGGYGK 401

Query: 592 RVEDAISSMTGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAM 646
           +++  ++ +   T +++     +     +LDD   ++  R+++   R   +F+ +
Sbjct: 402 QIDAIVTDLN--TNALKVASDGVTSTIKKLDDQYDAMQVRVDATVDRYRKQFNQL 454



 Score = 68.2 bits (165), Expect = 8e-16
 Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 33/221 (14%)

Query: 2   SLGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLM 61
           ++  +G+    D+  +++++ +AE  P    +  +  +  + +SAYG ++ +L T++   
Sbjct: 3   TISSLGVGANLDLATLLTQLQTAESQPLVA-LQAKAKSYTSKLSAYGTIQSALGTLQAAA 61

Query: 62  TQFRQEKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASE-VLDKDAKF 120
            +      F       +   ++SA++T  + AGNY++DV QLAQ+  + S    D     
Sbjct: 62  KKLGDPTLFQSVTGTPTVSGILSASSTDVSSAGNYTIDVGQLAQAQTLVSAGQADSKTAI 121

Query: 121 GPGKLHISLG--------------------------DKSFTLDVQGNSKLVDIVRGINGE 154
           G GK+ I  G                           KS T+D   N+ L  I   ING 
Sbjct: 122 GSGKITIDFGAISGGTLNATTGQYTGATFTADSSQPAKSITID-SSNNTLEGIRDAINGA 180

Query: 155 KSNPGVRASIINDVEGP--RLIVASNVSGKDHSVKMSAQAE 193
           K+  GV A+I+ND  G   RL++ S+ +G+  S+++S   +
Sbjct: 181 KA--GVTAAIVNDGSGTPNRLVLTSSATGEKSSMRISVDGD 219