Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., Flagellar cap protein FliD from Sphingobium sp. HT1-2

 Score = 68.9 bits (167), Expect = 5e-16
 Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 17/247 (6%)

Query: 424 MTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDRERV 483
           MT      ++ + LDG       +N I++AI  + + L    D N     + +      +
Sbjct: 220 MTSTSDPANAKITLDGT-DYEYASNTIDDAIPYLRIELTA-ADVNST-VNLTMTQPTATM 276

Query: 484 RNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQAPE 543
           ++ +++FV AYN   +           +  AG L G S VR   S+L  + S+ +     
Sbjct: 277 KDLLQEFVDAYNTLMKALNTSTSTGTDSSTAGVLNGVSAVRDMKSQLSKITSTQLASTG- 335

Query: 544 NLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFG---------GNQGFAKRVE 594
           + K+L + GI T R GTL +N   LD+ L  +   + +            G  G    V 
Sbjct: 336 SYKTLADIGIATNRDGTLTLNTDTLDKALAADPAGITKMLNPAKSTADNLGLSGLMDSVR 395

Query: 595 DAISSMTGVTGSIRTREK----SLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDAT 650
           D I    G   + + R +    SL EQ  +LD+D    + R+ S+      K SA+    
Sbjct: 396 DNIELENGPIKAAQDRYEKLADSLTEQLEKLDEDMADYETRLTSIYSAMQTKLSALNATQ 455

Query: 651 SKMQSQL 657
           S +Q Q+
Sbjct: 456 SYLQQQI 462



 Score = 57.4 bits (137), Expect = 1e-12
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 11/198 (5%)

Query: 3   LGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMT 62
           L  +G N+G D + +V+ +VSA R P+Q  I  ++T  +  ISA      SLDT  + +T
Sbjct: 13  LSALGANSGIDTSALVTSLVSATRDPRQSAITTQQTTNNARISALASAISSLDTFADALT 72

Query: 63  QFRQEKAFAVRKVDTSNEQVVSAT----ATTEAIAGNYSVDVLQLAQSH-KIASEVLDKD 117
                  +     +++N  + S +     T   +     V  L  A+     A+      
Sbjct: 73  SVLSGAEY-TGTPNSTNTNIASVSLLSGGTPTGMPAQLVVKSLATARIFASTATSGATSS 131

Query: 118 AKFGPGKLHI-SLGDKSFTLDV-QGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIV 175
              G G L I + G K+ T+ V   N+    +   IN   ++ GV AS++ D +G RL+ 
Sbjct: 132 TAVGTGSLTITTAGGKTATITVDSSNNSFSGLASAINA--ADIGVTASVVTDAQGTRLVF 189

Query: 176 ASNV-SGKDHSVKMSAQA 192
                +  D ++  SA +
Sbjct: 190 KGETGAANDFTITSSADS 207