Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., flagellar filament capping protein from Pseudomonas putida KT2440

 Score =  105 bits (263), Expect = 3e-27
 Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 12/209 (5%)

Query: 7   GMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMTQFRQ 66
           G+ +G D   +V  +  AE+ PKQQ+I  ++    T +SA G ++ +LDT ++ + +   
Sbjct: 8   GIGSGVDTQSIVKALADAEKAPKQQQITTQQKTTTTQVSAVGMIKNALDTFRSAIAKLNT 67

Query: 67  EKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAKF------ 120
             +F      +S+E+V  AT T  A AGNY+++V QLA S KI ++V             
Sbjct: 68  STSFTGLAGTSSDEKVAKATVTASASAGNYALEVTQLATSSKITTDVFAGGVSSVVNNSG 127

Query: 121 GPGKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIVASNVS 180
            P  L IS     + + +   + L  +   IN +  + G+ A+I+ D +G RL+++S+ +
Sbjct: 128 DPQTLTISQSSADYNVTIPDGATLQQVRDLINKQLGSQGINANILTDAKGSRLVMSSSTT 187

Query: 181 GKDHSVKMSA------QAEPGNPLKQLEY 203
           G+   + +S        A PG P +  +Y
Sbjct: 188 GEGSDITLSGDSSLVQNATPGAPAQNAKY 216



 Score = 99.8 bits (247), Expect = 2e-25
 Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 13/240 (5%)

Query: 430 AQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDRERVRNDIEQ 489
           AQ++   +DG+  L S +N +  AI GVN  L       +  + + +  +   ++  ++ 
Sbjct: 211 AQNAKYTIDGLE-LESKSNTVTGAISGVNFELLA-----EGKSRLSVATNTTTLKTSVQS 264

Query: 490 FVAAYNQFFQT----SKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQAPENL 545
           FV+AYN         +K  A  D  T  AG L GD+ +R+  S ++     S      ++
Sbjct: 265 FVSAYNALITAINTQTKVTATGDASTTTAGALTGDATMRALVSTVRNELVKSTGAG--SI 322

Query: 546 KSLTEFGITTTRQ-GTLEINYAMLDRQLNNNFTKLGEFFGGNQGFAKRVEDAISSMTGVT 604
             L++ GI T +Q G L ++    D+ +      +   F G++G  KR+  A  + TG T
Sbjct: 323 SMLSQMGINTDQQTGLLVLDDTKWDKAVAKGAADIAAVFTGDKGLIKRMTAATDAYTGTT 382

Query: 605 GSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKMQSQLAGMMNAL 664
           G + TR K+LN+    L   Q +LDRR+E+L     AK++AM    +K+ +  + +M  L
Sbjct: 383 GILATRTKNLNDNLTELTKQQEALDRRIETLTATLTAKYNAMDTLVAKLNATSSSVMTTL 442