Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., Flagellar hook-associated protein FliD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 67.4 bits (163), Expect = 1e-15
 Identities = 101/466 (21%), Positives = 188/466 (40%), Gaps = 56/466 (12%)

Query: 206 LEQRVRDLEKARAQAQQLIAPLTPEQQKVAAKVAEKIGDAARLVDQEVAQEIRSAAQSAQ 265
           L+Q + DL K     +  + P+T +Q   +AK+                  ++SA +  Q
Sbjct: 15  LDQLLTDLTK---NEKGRLTPITKQQSANSAKLT-------------AYGTLKSALEKFQ 58

Query: 266 GAAGEALNAGELTESAV--------KAAANAASEAKKYIRPEDRIPGWTETASGTLLDSY 317
             A  ALN  +L +S V        K +  A + A  Y     ++      A+ T   + 
Sbjct: 59  -TANTALNKADLFKSTVASSTTEDLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATT 117

Query: 318 WEPEEELDAQGQKKAADVPGWSNTASGTLLDSYVTPQEAQQKLEQKLAQEKAQIEAAIRS 377
            E   +     +    + PG         LD   T  EA   +   +    + I A+I  
Sbjct: 118 KEQLGDTSVTSRTIKIEQPGRKEPLE-IKLDKGDTSMEA---IRDAINDADSGIAASIVK 173

Query: 378 GKMTPEEAKAQARAKLSPEERAYIEQVEKAQAALNAAQSAFDGYGGMTEVQSAQDSMVVL 437
            K    +    A +      +  +E   K    L  A  +    G M E+  A+++ + +
Sbjct: 174 VKENEFQLVLTANSGTDNTMKITVEGDTKLNDLL--AYDSTTNTGNMQELVKAENAKLNV 231

Query: 438 DGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDRERVRNDIEQFVAAYNQF 497
           +G+  +   +N + +A +G+ LTL  K       A + +  D  + +  I+ +V AYN  
Sbjct: 232 NGI-DIERQSNTVTDAPQGITLTLTKKVT----DATVTVTKDDTKAKEAIKSWVDAYNSL 286

Query: 498 FQTSKELA---GVDP---RTGQAGPLAGDSIVRSADSRLKTVFSSSIEQAPENLKSLTEF 551
             T   L     V+P    + + G L GDS+VR+  + ++  F++S   +    K++ E 
Sbjct: 287 VDTFSSLTKYTAVEPGEEASDKNGALLGDSVVRTIQTGIRAQFANSGSNSA--FKTMAEI 344

Query: 552 GITTT-RQGTLEINYAMLDRQLNNNFTKLGEFFGGNQGFAKRVEDAISSMTGVTGSIRTR 610
           GIT     G L+I+   L + L +N     E   G+              TG+T  I T 
Sbjct: 345 GITQDGTSGKLKIDDDKLTKVLKDNTAAARELLVGD-----------GKETGITTKIATE 393

Query: 611 EKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKMQSQ 656
            KS       +D+ Q +++  ++SL K+  +  +++ +  ++ ++Q
Sbjct: 394 VKSYLADDGIIDNAQDNVNATLKSLTKQYLSVSNSIDETVARYKAQ 439



 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 90/432 (20%), Positives = 180/432 (41%), Gaps = 41/432 (9%)

Query: 2   SLGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLM 61
           S+  +G+ +   ++ +++ +   E+  +   I  +++     ++AYG L+ +L+  +   
Sbjct: 3   SISSLGVGSNLPLDQLLTDLTKNEK-GRLTPITKQQSANSAKLTAYGTLKSALEKFQTAN 61

Query: 62  TQFRQEKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAKFG 121
           T   +   F      ++ E +  +T T  A AG Y ++V QLA +  +A++      K  
Sbjct: 62  TALNKADLFKSTVASSTTEDLKVST-TAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQ 120

Query: 122 PG-------KLHISLGDKSFTLDV---QGNSKLVDIVRGINGEKSNPGVRASIINDVEGP 171
            G        + I    +   L++   +G++ +  I   IN   S  G+ ASI+   E  
Sbjct: 121 LGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAINDADS--GIAASIVKVKENE 178

Query: 172 RLIVASNVSGKDHSVKMSAQAEPG-NPLKQLEYKTLEQRVRDLEKARAQAQQLIAPLTPE 230
             +V +  SG D+++K++ + +   N L   +  T    +++L KA   A+  +  +  E
Sbjct: 179 FQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAE-NAKLNVNGIDIE 237

Query: 231 QQKVAAKVAEKIGDAARLVDQEVAQEIRSAAQSAQGAAGEALNAGELTESAVKAAANAAS 290
           +Q      +  + DA + +   + +++  A  +      +A  A +    A  +  +  S
Sbjct: 238 RQ------SNTVTDAPQGITLTLTKKVTDATVTVTKDDTKAKEAIKSWVDAYNSLVDTFS 291

Query: 291 EAKKYIRPEDRIPGWTETAS---GTLLDSYWEPEEELDAQGQKKAADVPGWSNTASGTLL 347
              KY   E   PG  E AS   G LL            Q   +A      SN+A  T+ 
Sbjct: 292 SLTKYTAVE---PG--EEASDKNGALLGD----SVVRTIQTGIRAQFANSGSNSAFKTMA 342

Query: 348 DSYVTPQEAQQKL---EQKLAQEKAQIEAAIRSGKMTPEEAKAQARAKLSPEERAYIEQ- 403
           +  +T      KL   + KL +      AA R   +  +  +     K++ E ++Y+   
Sbjct: 343 EIGITQDGTSGKLKIDDDKLTKVLKDNTAAARE-LLVGDGKETGITTKIATEVKSYLADD 401

Query: 404 --VEKAQAALNA 413
             ++ AQ  +NA
Sbjct: 402 GIIDNAQDNVNA 413