Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., flagellar capping protein (NCBI) from Escherichia coli BW25113

 Score = 81.6 bits (200), Expect = 7e-20
 Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 12/200 (6%)

Query: 2   SLGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLM 61
           S+  +G+ +G D++ ++  + +A++      I N++++    +SAYG L+ +L T +   
Sbjct: 3   SISSLGVGSGLDLSSILDSLTAAQKATLTP-ISNQQSSFTAKLSAYGTLKSALTTFQTAN 61

Query: 62  TQFRQEKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAK-- 119
           T   +   F+     TS+    SAT    AIAG Y++ V  LAQ+  + +     D K  
Sbjct: 62  TALSKADLFSATST-TSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTA 120

Query: 120 --FGPGKLHISL-GDKS-FTLDVQ-GNSKLVDIVRGINGEKSNPGVRASIINDVEGP-RL 173
                 KL I   GDK   T+D+   NS L  I   IN  K+  GV ASIIN   G  RL
Sbjct: 121 IATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAKA--GVSASIINVGNGEYRL 178

Query: 174 IVASNVSGKDHSVKMSAQAE 193
            V SN +G D+++ +S   +
Sbjct: 179 SVTSNDTGLDNAMTLSVSGD 198



 Score = 79.7 bits (195), Expect = 3e-19
 Identities = 64/259 (24%), Positives = 120/259 (46%), Gaps = 23/259 (8%)

Query: 414 AQSAFDGY------GGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDR 467
           A  +F GY       GM    +AQ++ + ++ VA + +++N I +A+E + L L   T  
Sbjct: 200 ALQSFMGYDASASSNGMEVSVAAQNAQLTVNNVA-IENSSNTISDALENITLNLNDVTTG 258

Query: 468 NQPPAEIGIEYDRERVRNDIEQFVAAYNQFFQTSKEL-------AGVDPRTGQAGPLAGD 520
           NQ    + I  D  + +  I+ +V AYN    T   L       AG D ++   G L GD
Sbjct: 259 NQT---LTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGD 315

Query: 521 SIVRSADSRLKTVFSSSIEQAPENLKSLTEFGITT-TRQGTLEINYAMLDRQLNNNFTKL 579
           S +R+  ++LK++ S+++  +  + K+L + GITT    G LE++   L   L  + + +
Sbjct: 316 STLRTIQTQLKSMLSNTVSSS--SYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGV 373

Query: 580 GEFF---GGNQGFAKRVEDAISSMTGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLE 636
           G      G   G    +   ++S    TG I+     +++   +L  D  +   R+++  
Sbjct: 374 GALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQV 433

Query: 637 KRTHAKFSAMQDATSKMQS 655
            R   +F+ +    + + S
Sbjct: 434 ARYKEQFTQLDVLMTSLNS 452