Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., Flagellar cap protein from Alteromonas macleodii MIT1002

 Score =  105 bits (263), Expect = 4e-27
 Identities = 66/243 (27%), Positives = 134/243 (55%), Gaps = 13/243 (5%)

Query: 429 SAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDRERVRNDIE 488
           +AQD+++ +DG+  +S+++N+  NA++G+ +T K +++ ++  A + +E+DRE V   I+
Sbjct: 233 NAQDAIIEVDGIQ-ISNSSNVFTNAVQGLTITAKRESEASEV-ANVDVEFDREGVTTKID 290

Query: 489 QFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQAPENLKSL 548
           +F+AA+N     + ++ G    +  + PL GD+ VRS   +L    ++ IE A +  +++
Sbjct: 291 EFIAAFN----NTIDMIG-QQSSSVSSPLFGDATVRSIKDQLTNALTTKIEGAGD-FETI 344

Query: 549 TEFGITTTRQGTLEINYAM--LDRQLNNNFTKLGEFFGGNQGFAKRVEDAISSMTGVTGS 606
            + G++    G LE    +  L+  L+ NF+ +G+ F    G A      + +    +G 
Sbjct: 345 FDIGLSLNENGKLEKQNVVRSLNEALDTNFSDIGKLFTNTGGLADTFGSILENYVDSSGV 404

Query: 607 IRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKMQSQ---LAGMMNA 663
           ++ R+  LN Q   L+DD+ +   RM+ LE     K++++    + M+S    L G +++
Sbjct: 405 LKQRQDILNLQKDDLEDDRLNHQFRMQQLESSLRQKYASLDTLIASMRSSGDYLMGQLSS 464

Query: 664 LGG 666
           L G
Sbjct: 465 LPG 467



 Score = 60.5 bits (145), Expect = 2e-13
 Identities = 48/217 (22%), Positives = 94/217 (43%), Gaps = 27/217 (12%)

Query: 7   GMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMTQFRQ 66
           G+ +G D+  ++S  + A   PK Q+  +  + +   ++  G ++  +  ++++  +   
Sbjct: 8   GVGSGLDLEAIISATLQASNQPKLQQFASRESELSVQLTGIGGIKSVMSKLQDVFEELAS 67

Query: 67  EKAFAVRKVDT---SNEQ----VVSATATTEAIAGNYSVDVLQLAQSHKIASEV------ 113
              F  R  +    SN +    +VS  A   A  G + ++VLQ A+  +  ++       
Sbjct: 68  PDEFNQRVANVRQPSNAETLGDLVSVRADGTATTGAFEINVLQTAKGSRAQTDTSNPANA 127

Query: 114 ---LDKDAKFGPGKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGVRASIINDVEG 170
               D+      G L  + G +SF +D++  + L DI + IN   S  GV A+IIN    
Sbjct: 128 FTSADEVVTTAAGTLTFTAGSESFDIDIEAGATLEDIRQKINNSASF-GVSANIINTGSE 186

Query: 171 PRLIVASNVSGKDHSV----------KMSAQAEPGNP 197
             L+  S+ +G  + +          ++S  A  G P
Sbjct: 187 SLLVFESSEAGAGNDLVITNNNAELDRLSTVANAGGP 223