Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

 Score =  272 bits (696), Expect = 2e-77
 Identities = 184/509 (36%), Positives = 268/509 (52%), Gaps = 68/509 (13%)

Query: 7   LLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGG----CILGSLRGQALS 62
           +LV +DDAAIR  L+  L   G +   + S       W  V  G     I   +     +
Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYE---VRSCGNAATLWRWVSQGDGDLVITDVVMPDENA 62

Query: 63  EQLIQSLTKAN-HIPLLVANKQ--------------------PYSLEEFPNYVGELDFPL 101
             L+  + KA   +P++V + Q                    P+ L+E  + VG     L
Sbjct: 63  FDLLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRA---L 119

Query: 102 NYPQLSDALRHCKEFLGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANV 161
             P+  D   H  E              ++ +   LVG+S  +QE+  L+ ++  T+  V
Sbjct: 120 AEPKKGDGHHHAPE-------------EQDNI--PLVGRSPAMQEIYRLLARLMQTDLTV 164

Query: 162 LILGESGTGKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITAR 221
           +I GESGTGKE+VAR +H +  RR GPFV IN  AIP +L+ESELFGHEKG+FTGA T  
Sbjct: 165 MIAGESGTGKELVARALHDYGKRRTGPFVAINMAAIPRDLIESELFGHEKGSFTGATTRN 224

Query: 222 KGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNL 281
            GRFE AEGGTLFLDEIGDMPM  Q +LLRVLQ+  +  VGG + IK +VR+IAAT+++L
Sbjct: 225 PGRFEQAEGGTLFLDEIGDMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIIAATNKDL 284

Query: 282 EEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAI 341
             +I    FREDL++RLNV P+ +P LR+R +D+P L++    + E EG         A+
Sbjct: 285 RTLIQQGLFREDLFFRLNVVPLRLPPLRERSEDVPDLVRHFFLQAEREGLPAKQIDSAAL 344

Query: 342 NSMMEHDWPGNVRELANLVERMVILYPNSLVDVNHLPTKYRY---SDIPEFQPEPSRFSS 398
           + +  + WPGNVREL NLV R+  LYP  ++    +  +      + + E  P  +  ++
Sbjct: 345 DRLKRYRWPGNVRELENLVRRLAALYPQEVITPAIIEAELSEPMPNMLSEEGPVDATLAA 404

Query: 399 VEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEA 458
             E+  +     F E+                  LPP G+    +L D+E  L++ AL A
Sbjct: 405 SVERHLNTYFSGFGEN------------------LPPPGL-YHRILKDVEYPLLSAALAA 445

Query: 459 QGGVVARAADMLGMRRTTLVEKMRKYNMQ 487
             G   +AA++LG+ R TL +K+R  ++Q
Sbjct: 446 TRGNQIKAAELLGLNRNTLRKKIRDLDIQ 474