Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Regulatory protein AtoC from Xanthobacter sp. DMC5

 Score =  244 bits (622), Expect = 6e-69
 Identities = 147/351 (41%), Positives = 198/351 (56%), Gaps = 44/351 (12%)

Query: 134 FRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPIN 193
           F +L+G+S     V   + +V+ + A+VL+LGESGTGKE+VAR IHY+S RR+ PFV +N
Sbjct: 143 FDNLLGESAVFHHVLRQVTEVAPSRASVLLLGESGTGKELVARAIHYNSPRRDLPFVAVN 202

Query: 194 CGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVL 253
           C AIP  L+ESELFGH KGAFTGA   R+GRF  A  GTLFLDEI DMP+ +Q K+LR L
Sbjct: 203 CAAIPETLIESELFGHVKGAFTGATGVREGRFAAANQGTLFLDEIADMPLPVQAKVLRAL 262

Query: 254 QERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRID 313
           QE+ FE VG + ++  +VR+IAATH++L++ I    FR DLYYRL VFPI +P LR+R D
Sbjct: 263 QEQSFEPVGSSKSVSVDVRIIAATHKDLQKEIAAGTFRMDLYYRLAVFPITLPPLRERTD 322

Query: 314 DIPLLLQELMTRMEAE-GAQPICFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLV 372
           DI LL    +     + G +    TP A   +  + WPGNVREL N +ER  I+    LV
Sbjct: 323 DIVLLADHFLAAATRDMGKRVKGLTPEAQAMLTRYRWPGNVRELQNCMERAAIVARGDLV 382

Query: 373 DVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQA 432
               L       D               + +   L G                D+D+   
Sbjct: 383 GPGDLLLFEANGD--------------TDVQSHTLNG----------------DLDSE-- 410

Query: 433 LPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEKMRK 483
                      L+ +E   + QAL+  GGV ARAA+ LG+   +L  +++K
Sbjct: 411 -----------LSRIEREFVLQALKDSGGVQARAAEKLGITERSLWHRIKK 450