Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  446 bits (1148), Expect = e-130
 Identities = 259/496 (52%), Positives = 331/496 (66%), Gaps = 32/496 (6%)

Query: 6   KLLVIEDDAAIRLNLSVILEFVGEQ---CEVIESTQ-IDQINWSAVWGGCILGSLRGQAL 61
           K+L+I+DD+  R +L+VIL F+GE+   C   +  Q +  ++ S      ++G++     
Sbjct: 6   KILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVSSLSSSREVICVLIGTVNAPGA 65

Query: 62  SEQLIQSL-TKANHIPLLVANKQPYSLEEFPN-----YVGELDFPLNYPQLSDALRHCKE 115
              L+++L T    +P+L+      S  E P       +  L+ P +Y +L D+L   + 
Sbjct: 66  VLGLLKTLSTWDEFLPVLLIGD--ISSVELPEDQRRRVLSTLEMPPSYSKLLDSLHRAQV 123

Query: 116 FLGRKGFQVLATA---RKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKE 172
           +  R+ +         R+  LFRSLVG S  IQ VR +++QV+ T+A+VLILGESGTGKE
Sbjct: 124 Y--REMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKE 181

Query: 173 VVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGT 232
           VVARN+HYHS RR+GPFVP+NCGAIPAELLESELFGHEKGAFTGAIT+R GRFELA GGT
Sbjct: 182 VVARNLHYHSKRRDGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGT 241

Query: 233 LFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFRE 292
           LFLDEIGDMP+ MQVKLLRVLQER FERVG N T   +VR+IAATH+NLE MI+   FRE
Sbjct: 242 LFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEVGSFRE 301

Query: 293 DLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGN 352
           DLYYRLNVFPIEM  LR+R++DIPLL+ EL++RME E    I F   AI S+  H WPGN
Sbjct: 302 DLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHGWPGN 361

Query: 353 VRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFA 412
           VRELANLVERM I++P  ++ V  LP K+RY D  + Q   S  + +E  ER  + G   
Sbjct: 362 VRELANLVERMAIMHPYGVIGVVELPKKFRYVDDEDEQLVDSLRTDME--ERVAING--- 416

Query: 413 EDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGM 472
                       PD  +   LPPEG++LK+ L +LE  LI QAL+   G+VARAA+ L +
Sbjct: 417 ----------HTPDFGSTAMLPPEGLDLKDYLGNLEQGLIQQALDDANGIVARAAERLRI 466

Query: 473 RRTTLVEKMRKYNMQR 488
           RRTTLVEKMRKY M R
Sbjct: 467 RRTTLVEKMRKYGMSR 482