Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  252 bits (643), Expect = 2e-71
 Identities = 149/370 (40%), Positives = 213/370 (57%), Gaps = 36/370 (9%)

Query: 119 RKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNI 178
           R   ++ A   ++  F SLVG S   ++V   ++ V  + A +L+ GESGTGKE+VAR I
Sbjct: 125 RDNARLRAELDEHAQFDSLVGDSPAFRKVLQAVDSVRDSSATILLTGESGTGKEMVARAI 184

Query: 179 HYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEI 238
           H H  R + PFV +NC AIP  LLESE+FGH KGAFTGA+  R GRF+ A+ GTLFLDE+
Sbjct: 185 HKHGSRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEV 244

Query: 239 GDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRL 298
           GDMP+++Q K+LR LQER  E VG     K +VRVIAAT++NL + +  ++FREDLYYRL
Sbjct: 245 GDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLDAVANKEFREDLYYRL 304

Query: 299 NVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPIC-FTPRAINSMMEHDWPGNVRELA 357
           NVFPI +P+LR+R++DI  L +     + A   + I  F+  A+ +M  + WPGN+REL 
Sbjct: 305 NVFPIPLPSLRERVEDIAPLARHFAQTLSATAGKRITGFSAEALQAMAAYHWPGNIRELQ 364

Query: 358 NLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNF 417
           N VER  I+  + +++   LP  Y ++  P  Q + +   S                   
Sbjct: 365 NCVERATIVAASPVIEDIDLP-GYLFASKPN-QGDVTAILS------------------- 403

Query: 418 EEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTL 477
                     D P  +P +   L   LA++E   I  AL+   GV A AA  +G+   + 
Sbjct: 404 ----------DGP-GIPQD---LDAALAEVEKAYILAALQESNGVQAAAAAKIGISERSF 449

Query: 478 VEKMRKYNMQ 487
             +++K  +Q
Sbjct: 450 WYRLKKLGIQ 459