Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake from Variovorax sp. SCN45

 Score =  250 bits (639), Expect = 6e-71
 Identities = 156/374 (41%), Positives = 218/374 (58%), Gaps = 18/374 (4%)

Query: 6   KLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLR--GQALSE 63
           ++L++EDD  +RL+ + +L   G + E   S +  + + S      ++  +R  G + +E
Sbjct: 8   RVLLVEDDEDVRLSTTQVLTLAGFEVEAFASAERARAHISFGVPAIVISDVRLPGMSGTE 67

Query: 64  QLIQSLTKANHIP-LLVANKQPYSLEEFPNYVGELDF---PLNYPQLSDALRHCKEFLGR 119
            L +  T    +P +LV      ++       G  DF   P +  +L   +RH  E   R
Sbjct: 68  WLGELHTADAELPVILVTGHGHIAMAVQAMREGAYDFIEKPFSSERLVAIVRHAIE--RR 125

Query: 120 KGFQVLATARK-----NTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVV 174
           +    + T R      N +   L+G+S  +Q+VR  +  ++ T A+VLI GE+GTGKE+V
Sbjct: 126 QLTLQVRTLRDALENWNGIQSVLIGRSAQMQQVRRTVMTLAETSADVLIYGETGTGKELV 185

Query: 175 ARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLF 234
           A+ +H HS RR   FVP+NCG +P  L ESELFGHE GAFT A  AR G+FE A GGTLF
Sbjct: 186 AQCLHAHSERRRRHFVPLNCGGLPEALAESELFGHEAGAFTSANRARVGKFEYANGGTLF 245

Query: 235 LDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDL 294
           LDEI  MPM +Q+KLLR LQER  ER+G N  I  + RV+AA+  +L+EM D QKFR DL
Sbjct: 246 LDEIESMPMPVQIKLLRALQERSIERIGSNKAIPFDCRVVAASKEDLKEMSDRQKFRADL 305

Query: 295 YYRLNVFPIEMPALRDRIDDIPLLLQE---LMTRMEAEGAQPICFTPRAINSMMEHDWPG 351
           YYRL V  IE+P LR+R +DIPLL +    L        AQP+  T   +  +M + WPG
Sbjct: 306 YYRLGVAFIELPPLRERREDIPLLFEHFTLLAANRYERAAQPL--TNAQLADLMAYAWPG 363

Query: 352 NVRELANLVERMVI 365
           NVREL N+ +R V+
Sbjct: 364 NVRELRNVADRFVL 377