Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., nitrogen regulation protein NR(I) from Vibrio cholerae E7946 ATCC 55056

 Score =  243 bits (621), Expect = 8e-69
 Identities = 171/490 (34%), Positives = 251/490 (51%), Gaps = 48/490 (9%)

Query: 9   VIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLR-----GQALSE 63
           V++DD++IR  +   L     +CE     +   +         ++  +R     G AL  
Sbjct: 8   VVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALERETPDVLVSDIRMPGMDGIALLN 67

Query: 64  QLIQSLTKANHIPLLV--------ANKQPYSLEEFPNYVGELDFPLNYPQLSDALRHCKE 115
           Q+ Q   +   +P+++        A    Y    F       D       +  A+ H   
Sbjct: 68  QVHQ---RTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAH--- 121

Query: 116 FLGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVA 175
             G++  +      +N     ++G++  +QEV   I ++S +  +VLI GESGTGKE+VA
Sbjct: 122 --GQEQRKTSHRPSENYSAPEIIGEAPAMQEVFRAIGRLSRSSISVLINGESGTGKELVA 179

Query: 176 RNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFL 235
             +H HS R   PF+ +N  AIP +L+ESELFGHEKGAFTGA T R+GRFE A GGTLFL
Sbjct: 180 HALHRHSPRAQKPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQGRFEQANGGTLFL 239

Query: 236 DEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLY 295
           DEIGDMP+ +Q +LLRVL +  F RVGG+  IK +VR++AATH+NLE+++   KFREDL+
Sbjct: 240 DEIGDMPLDIQTRLLRVLADGQFYRVGGHVAIKVDVRIVAATHQNLEKLVHQGKFREDLF 299

Query: 296 YRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAE-GAQPICFTPRAINSMMEHDWPGNVR 354
           +RLNV  I +P+LR+R  DI  L +  +     E G +     PR ++ + + DWPGNVR
Sbjct: 300 HRLNVIRIHIPSLRERRQDIEKLTKHFLALAAKELGVEMKTLNPRTVDILTKLDWPGNVR 359

Query: 355 ELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAED 414
           +L N+   + ++   S V    LP     SD+P       + S             F  D
Sbjct: 360 QLENMCRWLTVMASGSEV----LP-----SDLPSELLSERKASH------------FDND 398

Query: 415 FNFEEPQEFVPDIDAPQALPP-EGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMR 473
            ++++  E      A  AL   E   L   L + E  L+  AL    G    AA +LG  
Sbjct: 399 ISWQKQLE----TWAKSALASGETELLAYALPEFERILLEAALHHTNGHKQEAAKVLGWG 454

Query: 474 RTTLVEKMRK 483
           R TL  K+++
Sbjct: 455 RNTLTRKLKE 464