Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  254 bits (649), Expect = 4e-72
 Identities = 172/499 (34%), Positives = 251/499 (50%), Gaps = 72/499 (14%)

Query: 4   LAKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSA------VWGGCILGSLR 57
           +  + +I+D++ IR+ L+   E      +   S +   +   A      +     L  L 
Sbjct: 1   MCDVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLS 60

Query: 58  GQALSEQLIQSLTKANHIP-LLVANKQPYSLEEFPNYVGELDF---PLNYPQLSDALRHC 113
           GQ L   L   L + + +P +L+      S+     + G  DF   P    +L D +   
Sbjct: 61  GQNL---LSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRA 117

Query: 114 --KEFLGRKGFQVLATAR-KNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTG 170
             K  L  +  Q+  + +   TL   ++G++  IQ +R  I QV+ T+A++L+ GE+GTG
Sbjct: 118 IEKRRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTG 177

Query: 171 KEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEG 230
           KE+VAR++H  S RR   FV INCGA+P  L+ESEL+GHEKGAFTGA + R G+FE A+G
Sbjct: 178 KELVARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQG 237

Query: 231 GTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKF 290
           GTLFLDEI  MPM  Q++LLRVLQER  ER+G N  I  ++RVIAAT  +L++     KF
Sbjct: 238 GTLFLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKF 297

Query: 291 REDLYYRLNVFPIEMPALRDRIDDIPLLLQE-LMTRMEAEGAQPICFTPRAINSMMEHDW 349
           R+DLYYRLN+  + +P LR+R +DIP L    L+      G      T   + S++ HDW
Sbjct: 298 RQDLYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDW 357

Query: 350 PGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEG 409
           PGNVREL N  ER V+L                                          G
Sbjct: 358 PGNVRELRNAAERYVLL------------------------------------------G 375

Query: 410 IFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADM 469
             A+     EP+  +             + L E +A+ E +L+ Q L   GG +    + 
Sbjct: 376 KLAQFAESHEPKSKL-------------LGLNEQVAEFEKSLLEQTLIECGGSIKATMER 422

Query: 470 LGMRRTTLVEKMRKYNMQR 488
           L + R TL +KM+KY + +
Sbjct: 423 LHLPRKTLYDKMQKYQLDK 441