Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  247 bits (631), Expect = 5e-70
 Identities = 132/269 (49%), Positives = 174/269 (64%), Gaps = 8/269 (2%)

Query: 137 LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGA 196
           L+G+S  I+E+R L+ +++ TE+ VLI GESGTGKE+VAR +H  S R   PF+ INCGA
Sbjct: 138 LLGESRPIRELRKLLGKLAPTESPVLIRGESGTGKELVARTLHRQSQRSEQPFIAINCGA 197

Query: 197 IPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQER 256
           IP  L++SELFGHEKGAFTGA   + GR E A+GGTLFLDEIGD+P+ +Q  LLR LQE+
Sbjct: 198 IPEHLIQSELFGHEKGAFTGAHQRKTGRIEAADGGTLFLDEIGDLPLELQANLLRFLQEK 257

Query: 257 CFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIP 316
             ERVGG+  I  +VRV+AATH +LE  I+  +FREDLYYRLNV  +    LRDR  D+ 
Sbjct: 258 HIERVGGSQPIPVDVRVLAATHVDLERAIEQGRFREDLYYRLNVLQVVTAPLRDRHGDLS 317

Query: 317 LLLQELMTRMEAE-GAQPICFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVN 375
           +L          E G +P  F+  A+ +M  HDWPGNVRELAN V R ++L     ++  
Sbjct: 318 MLANHFAHFYSVETGRRPRSFSDHALAAMGRHDWPGNVRELANRVRRGLVLAEGRQIEAQ 377

Query: 376 HLPTKYRYSDIPEFQPEPSRFSSVEEQER 404
            L        +    PE     ++EE ++
Sbjct: 378 DL-------GLQLLDPEQQPLGTLEEYKQ 399