Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

 Score =  245 bits (626), Expect = 2e-69
 Identities = 153/376 (40%), Positives = 210/376 (55%), Gaps = 12/376 (3%)

Query: 1   MQSLAKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLRGQA 60
           + S A++++++DD  +R  LS  L+  G +   +   Q       A W G ++  +R   
Sbjct: 7   IDSRAQVILVDDDPHLRQALSQTLDLAGLKVVALAEAQGLAERIEADWPGVVVSDIRMPG 66

Query: 61  LSE-QLIQSLT-KANHIP-LLVANKQPYSLEEFPNYVGELDF---PLNYPQLSDALRHC- 113
           +   QL++ L  + + +P LL+       L       G  DF   P     L D++R   
Sbjct: 67  IDGLQLLEQLHGRDSELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFATDALLDSVRRAL 126

Query: 114 ---KEFLGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTG 170
              +  L  +  + LA + +  L   LVG S  +  +R  I  ++ T A+VLILGE+G G
Sbjct: 127 ALRRLVLDNRSLR-LALSDRQQLATRLVGHSPAMLRLREQIGALAGTRADVLILGETGAG 185

Query: 171 KEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEG 230
           KEVVAR +H  S R  GPFV IN GA+   ++ESELFGHE GAFTGA   R G+FE A G
Sbjct: 186 KEVVARALHDLSSRSEGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANG 245

Query: 231 GTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKF 290
           GTLFLDEI  M + +QVKLLR+LQER  ER+GGN  I  ++R+IAAT  +L +  D  +F
Sbjct: 246 GTLFLDEIESMSLDVQVKLLRMLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRF 305

Query: 291 REDLYYRLNVFPIEMPALRDRIDDIPLLLQELM-TRMEAEGAQPICFTPRAINSMMEHDW 349
           R DLYYRLNV P+ +P LR+R DDI +L Q       +  G  P    P     ++ HDW
Sbjct: 306 RADLYYRLNVAPLRIPPLRERGDDILVLFQHFADAASQRHGLSPHALQPAQRALLLRHDW 365

Query: 350 PGNVRELANLVERMVI 365
           PGNVREL N  ER  +
Sbjct: 366 PGNVRELQNAAERFAL 381