Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  247 bits (630), Expect = 7e-70
 Identities = 168/491 (34%), Positives = 248/491 (50%), Gaps = 41/491 (8%)

Query: 9   VIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLRGQALSEQLIQS 68
           V++DD++IR  L   L   G  C   E+        ++     +L  +R   +    +  
Sbjct: 8   VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67

Query: 69  LTKANH--IPLLV--------ANKQPYSLEEFPNYVGELDFPLNYPQLSDALRHCKEFLG 118
             K  H  +P+++        A    Y    F       D       +  A+ H +E   
Sbjct: 68  QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127

Query: 119 RKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNI 178
            +  Q+      N     ++G++  +Q+V  +I ++S +  +VLI GESGTGKE+VA  +
Sbjct: 128 PRNVQL------NGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181

Query: 179 HYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEI 238
           H HS R   PF+ +N  AIP +L+ESELFGHEKGAFTGA T R+GRFE A+GGTLFLDEI
Sbjct: 182 HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEI 241

Query: 239 GDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRL 298
           GDMP+ +Q +LLRVL +  F RVGG + +K +VR+IAATH+NLE+ +   KFREDL++RL
Sbjct: 242 GDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301

Query: 299 NVFPIEMPALRDRIDDIPLLLQELMTRMEAE-GAQPICFTPRAINSMMEHDWPGNVRELA 357
           NV  + +P LR+R +DIP L +  +     E G +     P    ++    WPGNVR+L 
Sbjct: 302 NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLE 361

Query: 358 NLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNF 417
           N    + ++     V +  LP +   S + E         S  + + D    + A+    
Sbjct: 362 NTCRWLTVMAAGQEVLIQDLPGELFESTVAE---------STSQMQPDSWATLLAQ---- 408

Query: 418 EEPQEFVPDIDAPQALPPEGVN-LKELLADLEVNLINQALEAQGGVVARAADMLGMRRTT 476
                      A +AL     N L E   +LE  L+  AL    G    AA +LG  R T
Sbjct: 409 ----------WADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNT 458

Query: 477 LVEKMRKYNMQ 487
           L  K+++  M+
Sbjct: 459 LTRKLKELGME 469