Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 692 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

 Score =  257 bits (656), Expect = 1e-72
 Identities = 146/359 (40%), Positives = 212/359 (59%), Gaps = 52/359 (14%)

Query: 134 FRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPIN 193
           F  ++G+S  +  V   +E V+ +++ VLILGE+GTGKE++AR IH  SGR N   V +N
Sbjct: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437

Query: 194 CGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVL 253
           C A+PA LLES+LFGHE+GAFTGA   R GRFELA+  +LFLDE+GDMP+ +Q KLLRVL
Sbjct: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497

Query: 254 QERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRID 313
           QE+ FER+G N  I+ +VR+IAAT+R+L++M+  ++FR DLYYRLNVFPI +P LR+R +
Sbjct: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557

Query: 314 DIPLLLQELMTRMEAEGAQPICFTP-RAINSMMEHDWPGNVRELANLVERMVILYPNSLV 372
           DIPLL +    ++     + I   P   + ++   +WPGNVREL N++ER V+L   +++
Sbjct: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617

Query: 373 DVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQA 432
            ++                                                +PDI  P+ 
Sbjct: 618 QLS------------------------------------------------LPDIVLPEP 629

Query: 433 LPPEGVNLKELLADLEVNLINQALEAQGGVVA---RAADMLGMRRTTLVEKMRKYNMQR 488
             P    +  L  + E  LI + L+   GVVA    AA  LG++RTTL+ +M++  + +
Sbjct: 630 ETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688