Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., putative 2-component regulator, interaction with sigma 54 (VIMSS) from Escherichia coli BW25113

 Score =  273 bits (697), Expect = 2e-77
 Identities = 172/439 (39%), Positives = 244/439 (55%), Gaps = 47/439 (10%)

Query: 56  LRGQALSEQLIQSLTKANHIP--LLVANKQPYSLEE-----FPNYVGELDFPLNYPQLSD 108
           L        L+  LT  NH P  LL+A+       E       +    +   +       
Sbjct: 259 LASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWR 318

Query: 109 ALRHCKEFLGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESG 168
           ++   +E L ++  Q+      N     ++ QS  ++++   ++ V+ +++ VLI GE+G
Sbjct: 319 SMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETG 378

Query: 169 TGKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELA 228
           TGKEV+AR IH  S RR+ P V INC AIPA LLESELFGH+KGAFTGAI   +GRFE+A
Sbjct: 379 TGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIA 438

Query: 229 EGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQ 288
           +GGTLFLDEIGD+P+ +Q KLLRVLQER  ER+GG+ TI  NVRVIAAT+R+L +M++ +
Sbjct: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498

Query: 289 KFREDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTP-RAINSMMEH 347
           +FR DL+YRLNVFP+E+P LRDR +DIPLL +    +M     + I   P  A+  +M  
Sbjct: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSW 558

Query: 348 DWPGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVL 407
           DWPGNVREL N++ER V+L   + +++ HL  +          P  +  S++      +L
Sbjct: 559 DWPGNVRELENVIERAVLLTRGNSLNL-HLNVRQ-----SRLLPTLNEDSALRSSMAQLL 612

Query: 408 EGIFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVA--- 464
                E+ + EE Q  V                             Q L    G+VA   
Sbjct: 613 HPTTPEN-DEEERQRIV-----------------------------QVLRETNGIVAGPR 642

Query: 465 RAADMLGMRRTTLVEKMRK 483
            AA  LGM+RTTL+ +M++
Sbjct: 643 GAATRLGMKRTTLLSRMQR 661