Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains from Enterobacter asburiae PDN3

 Score =  251 bits (642), Expect = 4e-71
 Identities = 143/359 (39%), Positives = 212/359 (59%), Gaps = 54/359 (15%)

Query: 134 FRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPIN 193
           F  ++G+S  +  V   +E V+ +++ VLILGE+GTGKE++AR IH  S R +   V +N
Sbjct: 378 FGEIIGRSDAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSNRNSRRMVKMN 437

Query: 194 CGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVL 253
           C A+PA LLES+LFGHE+GAFTGA + R GRFELA+  +LFLDE+GDMP+ +Q KLLRVL
Sbjct: 438 CAAMPAGLLESDLFGHERGAFTGASSQRLGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497

Query: 254 QERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRID 313
           QE+ FER+G N  I+ +VR+IAAT+R+L++M+  ++FR DLYYRLNVFPI +P LR+R +
Sbjct: 498 QEQEFERLGSNKLIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIFLPPLRERPE 557

Query: 314 DIPLLLQELMTRMEAEGAQPICFTP-RAINSMMEHDWPGNVRELANLVERMVILYPNSLV 372
           DIPLL++    ++     + I   P   + ++   +WPGNVREL N++ER V+L   +++
Sbjct: 558 DIPLLVKAFTAKIARRMGRNIDSIPAETLRTLSSMEWPGNVRELENVIERAVLLTRGNVL 617

Query: 373 DVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQA 432
            ++                                                +P++  P  
Sbjct: 618 QLS------------------------------------------------LPEVTLPDV 629

Query: 433 LPPEGVNLKELLADLEVNLINQALEAQGGVVA---RAADMLGMRRTTLVEKMRKYNMQR 488
             P     KE   + E  LI + L+   GVVA    AA  LG++RTTL+ +M++  + +
Sbjct: 630 TAPAAETAKE--GEDEYQLIMRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 686