Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., DNA-binding transcriptional regulator HyfR from Escherichia coli ECRC98

 Score =  273 bits (699), Expect = 1e-77
 Identities = 173/443 (39%), Positives = 246/443 (55%), Gaps = 47/443 (10%)

Query: 52  ILGSLRGQALSEQLIQSLTKANHIP--LLVANKQPYSLEE-----FPNYVGELDFPLNYP 104
           +L  L        L+  LT  NH P  LL+A+       E       +    +   +   
Sbjct: 255 LLHLLASNGCESSLLIPLTFGNHTPGALLLAHTSTTLFSEENCQLLQHIADRIAIAVGNA 314

Query: 105 QLSDALRHCKEFLGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLIL 164
               ++   +E L ++  Q+      N     ++ QS  ++++   ++ V+ +++ VLI 
Sbjct: 315 DAWRSMTDLQESLQQENHQLSEQLLSNLGVGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374

Query: 165 GESGTGKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGR 224
           GE+GTGKEV+AR IH  S RR+ P V INC AIPA LLESELFGH+KGAFTGAI   +GR
Sbjct: 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGR 434

Query: 225 FELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEM 284
           FE+A+GGTLFLDEIGD+P+ +Q KLLRVLQER  ER+GG+ TI  NVRVIAAT+R+L +M
Sbjct: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494

Query: 285 IDGQKFREDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTP-RAINS 343
           ++ ++FR DL+YRLNVFP+E+P LRDR +DIPLL +    +M     + I   P  A+  
Sbjct: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ 554

Query: 344 MMEHDWPGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQE 403
           +M  DWPGNVREL N++ER V+L   + +++ HL  +          P  +  S++    
Sbjct: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNL-HLNVRQ-----SRLLPTLNEDSALRSSM 608

Query: 404 RDVLEGIFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVV 463
             +L     E+ + EE Q  V                             Q L    G+V
Sbjct: 609 AQLLHPTTPEN-DEEERQRIV-----------------------------QVLRETNGIV 638

Query: 464 A---RAADMLGMRRTTLVEKMRK 483
           A    AA  LGM+RTTL+ +M++
Sbjct: 639 AGPRGAATRLGMKRTTLLSRMQR 661