Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., nif-specific transcriptional activator NifA from Dickeya dianthicola ME23

 Score =  263 bits (673), Expect = 8e-75
 Identities = 158/357 (44%), Positives = 209/357 (58%), Gaps = 41/357 (11%)

Query: 134 FRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPIN 193
           F S+VG S  +++   ++ QVS  +  VL+ GESGTGKE+VA  IH++S R   PFV  N
Sbjct: 206 FDSMVGTSAAMRQTLEIVRQVSRWDTTVLVRGESGTGKELVANAIHHNSPRAAAPFVKFN 265

Query: 194 CGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVL 253
           C A+P  LLESELFGHEKGAFTGA+  RKGRFELA+GGTLFLDEIG+   S Q KLLR+L
Sbjct: 266 CAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDEIGESSASFQAKLLRIL 325

Query: 254 QERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRID 313
           QE   ERVGG+ T++ NVR+IAAT+R+LEE +    FREDLYYRLNV P+ +P LR+R +
Sbjct: 326 QEGEMERVGGDETLRVNVRIIAATNRHLEEEVRAGHFREDLYYRLNVMPVSLPPLRERQE 385

Query: 314 DIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVD 373
           DI  L Q L+ ++ A   + +  +  AI  +M ++WPGNVREL N +ER  ++    L+D
Sbjct: 386 DIVELAQFLVKKIAAHQGRTLRISDGAIRLLMGYNWPGNVRELENCLERAAVMTDTGLID 445

Query: 374 VNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQAL 433
                                         RDV+       FN  +    +    +P A+
Sbjct: 446 ------------------------------RDVIL------FNHHDAAPMMNKTTSPPAV 469

Query: 434 PPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGM--RRTTLVEKMRKYNMQR 488
             EG   + L  D    LI  ALE  G V A+AA +LGM  R+     ++   NM R
Sbjct: 470 AEEGWLDQNL--DERQRLI-AALEKTGWVQAKAARLLGMTPRQVAYRIQIMDINMHR 523