Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein from Escherichia coli BL21

 Score =  259 bits (661), Expect = 2e-73
 Identities = 144/335 (42%), Positives = 202/335 (60%), Gaps = 40/335 (11%)

Query: 153 QVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKG 212
           +++ ++A+VLI GESGTGKE++AR IHY+S R  GPF+ +NC A+P  LLESELFGHEKG
Sbjct: 161 KIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKG 220

Query: 213 AFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVR 272
           AFTGA T R+G FE A  GTL LDEIG+MP+ +Q KLLR+LQER FER+GG+ TIK ++R
Sbjct: 221 AFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIR 280

Query: 273 VIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQ 332
           +IAAT+R+L+ M+    FREDL+YRLNV  + +P LRDR +DI LL    + +  +E  +
Sbjct: 281 IIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQR 340

Query: 333 PIC-FTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQP 391
            I    P A++ +    WPGN+REL+N++ER V++    ++    LP + R       QP
Sbjct: 341 DIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIR-------QP 393

Query: 392 EPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNL 451
                                           V +    +  P    NLKE +  +E  +
Sbjct: 394 --------------------------------VCNAGEVKTAPVGERNLKEEIKRVEKRI 421

Query: 452 INQALEAQGGVVARAADMLGMRRTTLVEKMRKYNM 486
           I + LE Q G   R A MLG+ R  L+ K+++Y +
Sbjct: 422 IMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456