Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., Regulatory protein AtoC from Azospirillum sp. SherDot2

 Score =  249 bits (635), Expect = 2e-70
 Identities = 174/497 (35%), Positives = 262/497 (52%), Gaps = 49/497 (9%)

Query: 3   SLAKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLRG---- 58
           S   +LV++DD AIR  L+ +L   G               ++A     +L  +R     
Sbjct: 12  SAPAVLVVDDDEAIREMLAAVLTRDGLSVTTAADGVEAVAAFAAQRHAVVLMDVRMPRMT 71

Query: 59  --QALSEQLIQSLTKANHIPLLVANKQPYSLEEFPNYVGELDFPLNYPQLSDALRHCKEF 116
             QAL+E  I+ L ++  + L+ A  +  +  +     G  D+ +    +++ L      
Sbjct: 72  GLQALAE--IRKLDRSTAVILMTAYAEVGAAVQAIKD-GAFDYVIKPFDIAEILLQVGRA 128

Query: 117 LG-RKGFQVLATARK--NTLFRS--LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGK 171
           L  R+    +AT  +  ++ +R+  ++  S  + E+   I +V+ + A VL+ GESGTGK
Sbjct: 129 LQMRRMRDDIATLHRELSSSYRTDRILTASPRMSELLQTIAKVAKSNATVLVTGESGTGK 188

Query: 172 EVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGG 231
           E+VA  IHY+S R  GPFV +NC A+P  LLESE FGHE+GAFTGA   R+GRFE AE G
Sbjct: 189 ELVAAAIHYNSPRNAGPFVKVNCAAVPEGLLESEFFGHERGAFTGAQARRRGRFEQAEHG 248

Query: 232 TLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFR 291
           TLFLDEIGD+  S+QVKLLRVLQER FERVGG   ++ +VRVI AT+RNLEEM+    FR
Sbjct: 249 TLFLDEIGDISPSLQVKLLRVLQEREFERVGGAELVRTDVRVIVATNRNLEEMVRQGLFR 308

Query: 292 EDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPIC-FTPRAINSMMEHDWP 350
           +DLY+RLNV  +    LR+R +D+ LL    + R  AE    +     +A+  ++ + WP
Sbjct: 309 QDLYFRLNVVTLRTVPLRERPEDVRLLASHFLQRFAAENRIDVSGIDEQAMERLLAYRWP 368

Query: 351 GNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGI 410
           GN+REL+N +ER V++   +++    LP +                              
Sbjct: 369 GNIRELSNAMERAVVMSTGAMIVTEDLPEQ------------------------------ 398

Query: 411 FAEDFNFEEPQEFVPDIDAPQALPPEGV-NLKELLADLEVNLINQALEAQGGVVARAADM 469
            A      EP     D D+  A  P    +L+E ++  E  ++  AL    G   + A  
Sbjct: 399 IAGRAGDSEP---ATDTDSDGAAAPSAAGSLREQVSRFEARVVADALARNDGNRMKTAQQ 455

Query: 470 LGMRRTTLVEKMRKYNM 486
           LG+ R +L+ K+++Y +
Sbjct: 456 LGISRRSLLYKLQEYGI 472