Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., two component response regulator from Agrobacterium fabrum C58

 Score =  280 bits (717), Expect = 6e-80
 Identities = 187/488 (38%), Positives = 272/488 (55%), Gaps = 28/488 (5%)

Query: 5   AKLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGS--LRGQALS 62
           A +LV +DDAAIR  L+  L   G     I S       W +   G ++ +  +     +
Sbjct: 3   ATILVADDDAAIRTVLNQALSRAGYDVR-ITSNAATLWRWVSAGEGDLVVTDVVMPDENA 61

Query: 63  EQLIQSLTKAN-HIPLLVANKQPYSLEEFP-NYVGELDF---PLNYPQLSDALRHCKEFL 117
             L+  + KA   +P+LV + Q   +     +  G  D+   P +  +L   +       
Sbjct: 62  FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIAIIGRALSEP 121

Query: 118 GRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARN 177
            RK  ++    +       LVG+S  +QE+  ++ ++  T+  ++I GESGTGKE+VAR 
Sbjct: 122 KRKPAKLDDDMQDGM---PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 178

Query: 178 IHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDE 237
           +H +  RRNGPFV IN  AIP +L+ESELFGHEKGAFTGA     GRFE AEGGTLFLDE
Sbjct: 179 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQNRSTGRFEQAEGGTLFLDE 238

Query: 238 IGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYR 297
           IGDMPM  Q +LLRVLQ+  +  VGG + I+ +VR++AAT+++L++ I+   FREDLYYR
Sbjct: 239 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRTDVRIVAATNKDLKQSINQGLFREDLYYR 298

Query: 298 LNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDWPGNVRELA 357
           LNV P+ +P LRDR +DIP L++  +   E EG +   F   A+  M  + WPGNVREL 
Sbjct: 299 LNVVPLRLPPLRDRAEDIPDLVRHFIQTGEKEGLEGKRFETEALEVMKAYAWPGNVRELE 358

Query: 358 NLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNF 417
           NL+ R++ LYP  ++    +  +   SD+P+    P    +V      + + +       
Sbjct: 359 NLIRRLMALYPQEVI-TREIIEQELQSDVPD---SPLDKMAVRTGSLTISQAV------- 407

Query: 418 EEPQEFVPDIDAP--QALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRT 475
              +E + D  A     LPP G+    +L +LE  LI  AL A  G   +AAD+LG+ R 
Sbjct: 408 ---EENMRDYFASFGDGLPPPGL-YDRVLRELEYPLILAALTATRGNQIKAADLLGLNRN 463

Query: 476 TLVEKMRK 483
           TL +K+R+
Sbjct: 464 TLRKKIRE 471