Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 595 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  109 bits (272), Expect = 2e-28
 Identities = 101/364 (27%), Positives = 168/364 (46%), Gaps = 32/364 (8%)

Query: 1   MMSSAVQEQHSHLDSLEDQVERYKQVLDVMPAGVILLDTQGIVREANPEAQRLL--DVPL 58
           M  +  Q Q +++D L    +R + VLD +  G++++D QG +   NP AQR L  D   
Sbjct: 238 MAEALRQHQATNVDELLAGQQRLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDEER 297

Query: 59  VGEKWYSVIQIAFAPRDDDGHEISLRNGRKVRLA--ISASTTGQLILIT-DLTETRLLQS 115
           +G+    + +    P  D+  ++ LR G   R    +     G+L L+T  LT     Q 
Sbjct: 298 LGQ---GLGEALVRPELDEQLQLVLRGGSLERAPEDLEVEVEGELRLLTYSLTPVSHTQG 354

Query: 116 RI-------SDLQRLSSLGRM----VASLAHQVRTPLSSA-MLYAANLAAPNLPPATRER 163
            I        D+    +  R+    V   +H++RTP++   M +         P  +RE 
Sbjct: 355 HILGAVMVLHDVTEQRAFERVRSEFVLRASHELRTPVTGMHMAFGLFRERAKFPAESRE- 413

Query: 164 FQSKLVDRLHD----LEKQVNDMLLFAK--GGDNKVVM-PFSIGDLAAEFMPMVETALKN 216
             + L+D +++    L + +ND+L F++   G  K+ + P  + DL              
Sbjct: 414 --ADLLDTVNEEMQRLMQLINDLLNFSRYQNGLQKLTLGPCDVTDLLEHARARFVEPANA 471

Query: 217 NQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQIDVFFRPVNGELKISVQ 276
             I+   E +S+   L  +   L   L NL+ NAL+    G QI +  R     + +SV+
Sbjct: 472 QNIELLVEAQSDLPRLYADQAQLERVLDNLLGNALRHTAAGGQIRLQARRHGERVIVSVE 531

Query: 277 DNGPGVPESLQHKIMEPFFTT--RSQGTGLGLAVVQMVCRAHGGRLELISKEGEGACFTM 334
           DNG G+    Q +I EPF     +  G GLGLA+ + + + HGGR+ + S+ G+G  F M
Sbjct: 532 DNGEGIAYGQQGRIFEPFVQVGRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYM 591

Query: 335 CIPL 338
            +PL
Sbjct: 592 ALPL 595