Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 756 a.a., Nitrogen regulation protein NtrY (EC 2.7.3.-) from Variovorax sp. SCN45

 Score =  105 bits (261), Expect = 5e-27
 Identities = 96/375 (25%), Positives = 173/375 (46%), Gaps = 64/375 (17%)

Query: 5   AVQEQHSHLDSLEDQVERYKQVLDVMPAGVILLDTQGIVREANPEAQRLLDVPLVGEKWY 64
           AV++    LD+    ++    +LD + +GVI+LD +G V   NP A R+L  PL   +  
Sbjct: 366 AVEKTMGQLDAARANLQT---ILDNLTSGVIVLDAKGTVLSTNPGATRVLRAPLAAYEGQ 422

Query: 65  SVIQI-------AFAPRDDD-----------------------GHEISLRNGRKVRLAIS 94
           S++ +       A   +  D                       G ++  ++G    +A  
Sbjct: 423 SLVDVPGLAEFGAKVQQQFDEFLVERMQHGLDHWQHAFELHASGQDMPQQDGAINIVARG 482

Query: 95  ASTTG--QLILITDLTETRLLQSRISDLQRLSSLGRMVASLAHQVRTPLSSAMLYAANL- 151
           A   G  +L++  D++E       I   QR  + G +   LAH+++ PL+   L A  L 
Sbjct: 483 AELPGAARLLVFDDISE-------IVSAQRAQAWGEVARRLAHEIKNPLTPIQLSAERLE 535

Query: 152 ---AAPNLPP--ATRERFQSKLVDRLHDLEKQVNDMLLFAK--GGDNKVVMPFSIGDLAA 204
              +    PP  A   +    +VD++  +++ VN+   +A+    D K   P  +  L  
Sbjct: 536 MKLSGKVQPPEQAVLVKSVKTIVDQVDAMKRLVNEFRDYARLPAADLK---PVDLNALLV 592

Query: 205 EFMPMVETALKNNQIDYGQEVESEETMLLGNANALASALSNLVMNALQIA-----GKGSQ 259
           + + +     ++  I    E++     + G+A  +   + NL+ NA   A     G G +
Sbjct: 593 DVLQLYNA--ESLPIVLRSELDERCPPIRGDAQQIRQVIHNLLQNAQDAAEAAASGTGKR 650

Query: 260 IDVFFRPVNGE----LKISVQDNGPGVPESLQHKIMEPFFTTRSQGTGLGLAVVQMVCRA 315
            +V  R   G+    ++++VQD+GPG  E++  +  EP+ TT+++GTGLGLAVV+ +   
Sbjct: 651 GEVVIRTRLGDSGRRVRLTVQDSGPGFAENILKRAFEPYVTTKTKGTGLGLAVVKKIADE 710

Query: 316 HGGRLELISKEGEGA 330
           HG R+EL ++  +GA
Sbjct: 711 HGARIELSNRVVDGA 725