Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., Alginate biosynthesis sensor protein KinB from Pseudomonas putida KT2440

 Score =  105 bits (262), Expect = 3e-27
 Identities = 92/370 (24%), Positives = 170/370 (45%), Gaps = 43/370 (11%)

Query: 1   MMSSAVQE-QHSHLDSLEDQVERYKQVLDVMPAGVILLDTQGIVREANPEAQR------- 52
           +M+ A+++ Q +++D L    +R + VLD +  G++++D QG +   NP AQR       
Sbjct: 235 LMADALRKHQATNVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDS 294

Query: 53  --------LLDVPLVGEKWYSVIQIAFAPRDDDGHEISLRNGRKVRLAISASTT------ 98
                    L  P + ++   V++     R  D  ++++    + RL   + T       
Sbjct: 295 RLGSSLVEALQRPELEQQLRQVLRGGSLDRPPD--DLNMEVDEESRLLTYSLTPVSHPQG 352

Query: 99  ---GQLILITDLTETRLLQSRISDLQRLSSLGRMVASLAHQVRTPLSSA-MLYAANLAAP 154
              G ++++ D+TE R  +   S+          V   +H++RTP++   M +       
Sbjct: 353 PILGAVMVLHDVTEQRAFERVRSEF---------VLRASHELRTPVTGMHMAFGLLRERV 403

Query: 155 NLPPATRERFQSKLV-DRLHDLEKQVNDMLLFAK---GGDNKVVMPFSIGDLAAEFMPMV 210
             PP  RE    + + + +  L + +ND+L F++   G     + P +I DL        
Sbjct: 404 KFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLDHAQSRF 463

Query: 211 ETALKNNQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQIDVFFRPVNGE 270
                + QI+  +E++     +  +   L   L NL+ NA++    G +I +  R     
Sbjct: 464 AEQAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLHARRHAER 523

Query: 271 LKISVQDNGPGVPESLQHKIMEPFFTT--RSQGTGLGLAVVQMVCRAHGGRLELISKEGE 328
           + ISV+DNG G+    Q +I EPF     +  G GLGLA+ + + + HGGR+ + S+ G+
Sbjct: 524 VIISVEDNGEGISYGQQARIFEPFVQVGRKKGGAGLGLALCKEIVQLHGGRMGVFSRPGQ 583

Query: 329 GACFTMCIPL 338
           G  F M +P+
Sbjct: 584 GTQFYMALPV 593