Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 984 a.a., Two-component sensor CbrA: intrcellular carbon:nitrogen balance from Pseudomonas sp. S08-1

 Score =  117 bits (294), Expect = 1e-30
 Identities = 88/374 (23%), Positives = 177/374 (47%), Gaps = 32/374 (8%)

Query: 2   MSSAVQEQHSHLDSLEDQVER----YKQVLDVMPAGVILLDTQGIVREANPEAQRLLDVP 57
           + S +++  S L  L  +++     ++Q L  +P GV  L     V   N   + L D+ 
Sbjct: 609 IESRLEDYQSRLTGLAAELDALRRFHRQTLQELPMGVCSLAKDQEVLMWNRAMEELTDIS 668

Query: 58  ---LVG-------EKWYSVIQIAFAPRDDDGHEISLRNGRKVRLA----------ISAST 97
              +VG       E W S+++      ++  H+  L    +VR            ++   
Sbjct: 669 AQQVVGSRLLSLDEPWRSLLKDFIEQDEEHLHKQHLALDGEVRWLNLHKAAIDEPLAPGN 728

Query: 98  TGQLILITDLTETRLLQSRISDLQRLSSLGRMVASLAHQVRTPLSSAMLYAANLAAPNLP 157
           +G ++L+ D+TETR+L+ ++   +RL+S+GR+ A +AH++  P++     A NL      
Sbjct: 729 SGLVLLVEDVTETRVLEDQLVHSERLASIGRLAAGVAHEIGNPVTGIACLAQNLREEREG 788

Query: 158 PATRERFQSKLVDRLHDLEKQVNDMLLFAKGG-DNKVVMPFSIGDLAAEFMPMVETALKN 216
               +    +++++   + + V  ++ FA  G   +   P S+ ++A + + ++     +
Sbjct: 789 DEELDEISGQILEQTKRISRIVQSLMNFAHAGQQQRAEYPVSLAEVAQDAIGLLALNRNS 848

Query: 217 NQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQIDVFFRPVNGELKISVQ 276
            ++ +    + +  +  G+   LA  L NL+ NA   +  G  I V        +++ V+
Sbjct: 849 AEVQFFNLCDPDH-LAKGDPQRLAQVLINLLSNARDASPVGGAIRVTSDATEQSVELIVE 907

Query: 277 DNGPGVPESLQHKIMEPFFTTR--SQGTGLGLAVVQMVCRAHGGRLELIS----KEGEGA 330
           D G G+P+++  ++ EPFFTT+   +GTGLGLA+V  +   H G++ + S    +   G 
Sbjct: 908 DEGTGIPQAIMDRLFEPFFTTKDPGKGTGLGLALVYSIVEEHYGQITIDSPADPERQRGT 967

Query: 331 CFTMCIPLERQADS 344
            F + +P   +A S
Sbjct: 968 RFRVTLPRYVEATS 981