Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 925 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score = 95.1 bits (235), Expect = 6e-24
 Identities = 93/376 (24%), Positives = 159/376 (42%), Gaps = 47/376 (12%)

Query: 2   MSSAVQEQHSHLDSLEDQVERYKQVLDVMPAGVILLDTQGIVREAN--------PEAQRL 53
           + + VQE+ + L+  E    R + +LD +PA +  L    I+R  N         +A  L
Sbjct: 415 LDTRVQERTNELEEAET---RRRLILDAIPAAIAYLGRDEIIRFVNRGWAELVRQDAAEL 471

Query: 54  LDVPL---VGEKWYSVIQ-------------IAFAPRDDDGHEISLRNGRKVRLAISAST 97
           +   L   +G   ++ IQ               ++    DGH ++ RN    +LA + + 
Sbjct: 472 IGRDLRSAIGRFAHAAIQAHMERTWAGEEVTFTYSFPHPDGHTVTTRNTLIPQLAANGAV 531

Query: 98  TGQLILITDLTETRLLQSRISDLQRLSSLGRMVASLAHQVRTPLSSAMLYAANLAAPNLP 157
           T   +L  D++  +  ++++ + QR+ ++G++   LAH     LS  +    NLAA    
Sbjct: 532 TAMFVLALDISAEKATETQLMEAQRMKAVGQLSGGLAHDFNNLLSVIL---GNLAAARDR 588

Query: 158 PATRERFQSKLVDRLHDLEK--QVNDMLLFAKGGDNKVVMPFSIGDLAAEFMPMVETALK 215
            A  +   S L   +    +   +   LL           P  +  L  E   ++  +L 
Sbjct: 589 YAEIDGLDSYLEPAVRASRRGADITSRLLAFSRQQPLKPQPVDVSALVREVSVLLSRSLP 648

Query: 216 NNQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQI--DVFFRPVNGEL-- 271
           ++ I      E  E   + +AN L +AL NL +NA      G ++  DV  R V   L  
Sbjct: 649 SS-ITITIPDEGGECWAIADANQLENALINLALNARDAMPDGGRLEMDVRLRRVTDPLTF 707

Query: 272 ----------KISVQDNGPGVPESLQHKIMEPFFTTRSQGTGLGLAVVQMVCRAHGGRLE 321
                     ++ V DNG G       +  EPFFTT+  G+GLGL++V    +   G + 
Sbjct: 708 DEQVEPDDYLEVRVSDNGLGFAPEAMTRAFEPFFTTKRLGSGLGLSMVYGFVKQSKGYIT 767

Query: 322 LISKEGEGACFTMCIP 337
           L S+ G G+  T+ +P
Sbjct: 768 LDSRLGMGSTVTILLP 783