Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 608 a.a., sensory histidine kinase in two-component regulatory system with AtoC (NCBI) from Escherichia coli BW25113

 Score =  140 bits (353), Expect = 9e-38
 Identities = 101/337 (29%), Positives = 178/337 (52%), Gaps = 27/337 (8%)

Query: 33  GVILLDTQGIVREANPEAQRLLDVP---LVGE---------KWYS-VIQIAFAPRDDDGH 79
           GVI +D QG V   NP A+ +       LVG+         ++YS V+       +    
Sbjct: 274 GVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLFDNTQFYSPVLDTLEHGTEHVAL 333

Query: 80  EISLRNGRKVRLAISASTT----------GQLILITDLTETRLLQSRISDLQRLSSLGRM 129
           EIS   GR   + +S +T+          G L++ +DLT  +  Q R++  +RL++LG +
Sbjct: 334 EISFP-GRDRTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATLGEL 392

Query: 130 VASLAHQVRTPLSSAMLYAANLAAPNLPPATRERFQSKLVDRLHDLEKQVNDMLLFAKGG 189
           +A +AH+VR PL++   Y   L      P  +E + S ++  +  + K +  +L F++  
Sbjct: 393 MAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQE-YLSVVLKEIDSINKVIQQLLEFSRPR 451

Query: 190 DNKVVMPFSIGDLAAEFMPMVETALKNNQIDYGQEVESEETMLLGNANALASALSNLVMN 249
            ++     S+  L  E + +V+TA    ++D+  E+++E + +  +   L   L N+++N
Sbjct: 452 HSQW-QQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNILIN 510

Query: 250 ALQ-IAGKGSQIDVFFRPVNGELKISVQDNGPGVPESLQHKIMEPFFTTRSQGTGLGLAV 308
           A+Q I+ +G      ++  + +  IS++DNG G+  SLQ KI +PFFTT++ GTGLGLA+
Sbjct: 511 AVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFFTTKASGTGLGLAL 570

Query: 309 VQMVCRAHGGRLELISKEGEGACFTMCIPLERQADSS 345
            Q +  AH G + + S  G GA FT+ +P+  Q + +
Sbjct: 571 SQRIINAHQGDIRVASLPGYGATFTLILPINPQGNQT 607