Pairwise Alignments

Query, 351 a.a., PAS domain-containing sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 534 a.a., Adaptive-response sensory-kinase SasA from Azospirillum sp. SherDot2

 Score =  104 bits (259), Expect = 6e-27
 Identities = 92/391 (23%), Positives = 173/391 (44%), Gaps = 60/391 (15%)

Query: 15  SLEDQVERYKQVLDVMPAGVILLDTQGIVREANPEAQRLLD---VPLVGEKWYSVIQIAF 71
           +L ++  R   +L  +P  +I++D +G++   +P A+RL       + G     ++   +
Sbjct: 144 ALREREARLASILQTVPEAIIVIDEKGLIESFSPAAERLFGYAAAEVAGRNISMLMPSPY 203

Query: 72  APRDDDGHEISLRNGRKVRLAISASTTGQ---------------LIL---------ITDL 107
             + D   E   R G +  + I    +GQ               ++L         + DL
Sbjct: 204 REQHDGYLERYGRTGERRIIGIGRIVSGQRRDGSVFPMELAVGEVLLAGRRCFTGFVRDL 263

Query: 108 TETRLLQSRISDLQ-------RLSSLGRMVASLAHQVRTPLSSAMLYAANLAAPNLPPAT 160
           TE +  + R+ +LQ       R+S++G+M ++LAH++  PL++ + YA         P T
Sbjct: 264 TERQATERRLQELQSELLHVSRVSAMGQMASTLAHELNQPLTAVINYAKAAKRLMERPET 323

Query: 161 RERFQSKLVDRLHDLEKQVNDML-----LFAKGGDNKVVMPFSIGDLAAEFMPMVETALK 215
             +    +VD+      +   ++        KG  ++ V   S+  +  E   +     K
Sbjct: 324 VSKAMD-MVDKASAQATRAGQIIRHLRSFIEKGKTHRSVE--SLNKVVEEASALALVGAK 380

Query: 216 NNQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAG--KGSQIDVFFR----PVNG 269
           +  +    + E  +  +L +   +   + NLV NA++  G   G Q  +  R    P + 
Sbjct: 381 DRGLHVRFDFEPADPQVLIDKVQVQQVILNLVRNAIEAMGGAPGGQRVLTVRTGPEPADE 440

Query: 270 ELK-ISVQDNGPGVPESLQHKIMEPFFTTRSQGTGLGLAVVQMVCRAHGGRLEL------ 322
             + +SV D+GPGVPE+++ ++ +PF TT+S G GLGL++ + +  AHGGRL L      
Sbjct: 441 AFRRVSVTDSGPGVPETVRAQLFQPFVTTKSSGMGLGLSICRSIIEAHGGRLWLEPAADL 500

Query: 323 -----ISKEGEGACFTMCIPLERQADSSNSE 348
                      GA F   +PL     +S+++
Sbjct: 501 PTESPAEPPSTGASFAFTVPLSTSLSASDAD 531



 Score = 34.7 bits (78), Expect = 6e-06
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 20  VERYKQVLDVMPAGVILLDTQGIVREANPEAQRLLD---VPLVGEKWYSVIQIAFAPRDD 76
           + + + +LD +P GV+++D +G +   NP  +RL       +VG     ++   +    D
Sbjct: 21  LSQLQAMLDTVPDGVVIIDDRGRITSFNPACERLFGWAAAEVVGRNVNILMPAPYREEHD 80

Query: 77  DGHEISLRNGRKVRLAISASTTGQ 100
              E   R G +  + I    TGQ
Sbjct: 81  GYLERYHRTGERRIIGIGREVTGQ 104