Pairwise Alignments

Query, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

 Score =  284 bits (727), Expect = 4e-81
 Identities = 176/487 (36%), Positives = 261/487 (53%), Gaps = 24/487 (4%)

Query: 3   MAQSKVLIVEDDEGLREALIDTLALAGYEWLEADCAEDALLKLKSHSVDIVVSDVQMAGM 62
           M    +L+ +DD  +R  L   L+ AGYE      A      +     D+V++DV M   
Sbjct: 1   MPSGSILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDE 60

Query: 63  GGLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYA- 121
               LL  IK+  P+LPV++M+A      A+ A + GA +Y+ KPF  + L+++V R   
Sbjct: 61  NAFDLLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRALA 120

Query: 122 -PVKSD---------DNGDAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRY 171
            P K D         DN   V       ++  L  ++ +TD  VMI G SG+GKE+++R 
Sbjct: 121 EPKKGDGHHHAPEEQDNIPLVGRSPAMQEIYRLLARLMQTDLTVMIAGESGTGKELVARA 180

Query: 172 IHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDE 231
           +H+   R+ GPF+AIN AAIP +++E+ LFG+EKG+FTGA    PG+FEQA+GGT+ LDE
Sbjct: 181 LHDYGKRRTGPFVAINMAAIPRDLIESELFGHEKGSFTGATTRNPGRFEQAEGGTLFLDE 240

Query: 232 ISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYR 291
           I +M +  Q +LLRVLQ+ E   +G R  IK DVR++A +N+DL+  +Q G FREDL++R
Sbjct: 241 IGDMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIIAATNKDLRTLIQQGLFREDLFFR 300

Query: 292 LNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVREL 351
           LNV PL  P L ER +D+  L  H      ++ GLP   I   A+ +L  Y WPGNVREL
Sbjct: 301 LNVVPLRLPPLRERSEDVPDLVRHFF-LQAEREGLPAKQIDSAALDRLKRYRWPGNVREL 359

Query: 352 DNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFKPL 411
           +N+V+R   L        + ++   +   + S     +  E          +        
Sbjct: 360 ENLVRRLAAL------YPQEVITPAIIEAELSEPMPNMLSEEGPVDATLAASVERHLNTY 413

Query: 412 VQGGGQNSSSQSSGLGGE-LRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAKM 470
             G G+N      GL    L+D E+ ++   LA  +G + + AE LG++  TLR    K+
Sbjct: 414 FSGFGEN--LPPPGLYHRILKDVEYPLLSAALAATRGNQIKAAELLGLNRNTLR---KKI 468

Query: 471 RDAGIDI 477
           RD  I +
Sbjct: 469 RDLDIQV 475